Lfen017851.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lordiphosa fenestrarum
Gene Symbol
RREB1
Assembly
GCA_035044985.1
Location
JAWNNO010005546.1:630662-637656[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.045 2.8 8.9 0.8 1 21 235 255 235 257 0.93
2 12 0.00042 0.027 15.3 0.2 1 23 267 289 267 289 0.98
3 12 0.0001 0.0064 17.2 7.3 1 23 295 317 295 317 0.98
4 12 4.8 3.1e+02 2.5 4.3 2 19 506 523 506 525 0.97
5 12 0.01 0.67 10.9 0.1 1 23 667 689 667 689 0.97
6 12 4.5e-05 0.0029 18.3 1.3 1 23 699 721 699 721 0.99
7 12 0.001 0.066 14.1 2.0 1 23 727 750 727 750 0.97
8 12 0.0037 0.24 12.3 2.0 1 23 1005 1028 1005 1028 0.95
9 12 0.00011 0.0069 17.1 0.3 2 23 1335 1356 1334 1356 0.97
10 12 0.18 12 7.0 6.3 1 23 1362 1385 1362 1385 0.97
11 12 0.01 0.67 10.9 0.5 3 23 1573 1593 1571 1593 0.96
12 12 0.0017 0.11 13.4 4.8 1 23 1599 1621 1599 1621 0.99

Sequence Information

Coding Sequence
ATGCTGGCCACACAGAAGCCCACTCACGAGTCTGACATGGAACGCCCACGCCGGGACTCCACCACCTCGGAGTCCTCGCTGGAGCACCTCGATCTCGGTCGCACACCAAAGAAGCtgagcagcaacagcggcgCTCCGCAGCCGACCTCAACGCCGCACGAGGTGTCGTCGGTGTCCCGCAAACGCAAACtgcgacagcagcaacaacaccagccacagcagcagcagcagcagccggcgCATCAGTTGTCAGCCGCATCGGAGGATGAGTTTGAGGAACAGCTGgaggcaacagcagcggcagcagtggCCGCCGTGCAGCGACCGCGTCACAAACAGCGACGcaacgccgccgccgccgccgccatcgTTGCCGCCGCTGCCAGCGCCAGCATTGTCATGGACTACAGTGCCGGCGATGTCAACTCTCTGCGCAAGAAATTCCGCCTGAATCGCAGCAGCGTCAGCACCCTCAACGGTGAACTCTCCGAATCGGGCTTTGTGGATGGCAGCGGCAGTGGCTTTCTGTTGAGCAATCACAGCGGCGCCGCACTGGCTGCAGCCTCcgtcaacagcagcaacaatcaGGCCAGTGCCAGTGTCTTGGCCTCCAGTTCGGCCAGTTCGGGCGCCTCCTCGCCGCAGGGCCTGTGCCTGTCCAGCGCTGAGTCGGGCATCGGTGCCGGCGATGAGCATATGAAATATCTCTGCCCCATCTGTGAGGTGGTCTCGGCCACGCCCCATGAGTTCACCAATCACATTAGATGCCACAATTATGCGAATGGCGATACCGAGAATTTCACCTGCCGTATTTGCTCCAAGGTGCTCTCATCGGCCTCCTCGCTGGACAGACATGTGCTGGTGCATACCGGTGAGCGTCCGTTCAACTGTCGCTACTGTCATCTGACCTTCACCACCAACGGCAACATGCATCGTCATATGCGTACACACAAGCAACACCAGACGACGGCAGCAACACAATCGGCGTCGGGTTCCCTCAGcgcacaacagcagcagcagcagcatcgccgacagcagcaacatcagcagcagcagcagcagcagctgggcGCCAATTCGGGACAAAACTCAACGGGTACCGGGCGTGCCGAGAGCTATGAAAGCGATGCCAGCTGCTCCACGGATGTGTCCAGTGCCAATAGTCAGAGCAGCAGCTCCcagaccaacaacaacagtcacAAGGCCACCAACAGGGAGGCGGCGGGTAAGCTGAAGACCAACcataacaacaacatcatGGATGATGGCGGCGAGGAAGAGGAAGAgccggaggaggaggaggaggaggatgaggaagTGGATGTGGCGCTGCCATTGTCCATTACCAGCACCCCAGATGTGGATACGCTGCTGGCGGGCGCCGGTCCGGGCTCGGGGGCAGCCTCGCCTGTGCCCAGCCTGGGCTTGAGTTGTCCCGCCTGCGGTGCAAGTGATTTTGATACGCTGCCCGGTCTGTGTGCGCATCTGGATGCACAGCATGGCGATATACCGGCCAAGTGTCGGGACTGTGATGTCATCTATGCCACACATCGTCAGCTGCAGTCGCATTGCTGTCGTGCGGCGGTGGGCGGCGGGATGCCGCCCTTGCTGGGCGTCAGCAGTTCGCCGCTGCATGAGACGCACGGGGAGCAGGATGCCGACGaagaggaggatgaggaggaggaggaggaggcacGCCAACAGGCCTCGGCCTCGCAGCGCGAGGACTTCTTTCAGCAGCTGTACCTCAAGGGCAAGGGGCCCACCTCGCCGCCCTCGCCCATCAAGCACGAGCCAGCGGACAGCAAGGATCTGGCCGACATACAGAGCATACTCAACATGACCAGCTCCAGCTGCACCTCCAACTTTCTGCGCAACTTCGAGCAGTCGGTGAACACCCCCTGCTCCAGCCAGTACAGCCTGGATGGCCGCGACGGCGAGGAGGAGGCCCAGGATGTGTTCACCTCGGAGTTCCGTCGCATGAAGCTGCGCGGCGAGTTCCCCTGCAAGCTGTGCACGGCGGTGTTTCCCAATCTGCGCGCCCTCAAGGGCCACAATCGCGTGCACTTGGGCGCAGTGGGTCCCGCCGGACCCTTCCGCTGCAACATGTGCTCCTATGCGGTGTGCGACAAGGCCGCCCTGGTGCGTCACATGCGCACCCACAACGGCGACCGTCCGTACGAGTGTGCCGTCTGCAACTACGCCTTCACCACCAAGGCCAACTGTGAGCGCCACCTGAGGAATCGTCACGGCAAGACCAGCCGCGAGGAGGTGAAACGGGCCATCGTCTATCATCCGGCCGAGGATGCCAGCTGTGATGAGAGCAGCAAGTCACGCCTGGGCGATGAGCTCAACGAGCTGAGCTTCCGTTCGGTGACACCGCCTCCGCCTGCCATTGAGAGCTCCTCCCAGCTGAAGCATATGCTGATGGCGGAGACGCAGCCTCAGCAGCCACCACAgtcacagcaacaacagcagcagcagccgcctccGCCGCCGCTCAAGATTCAGGTCAAGAGTCTGGATCAGCTGGTGGACAAGCCGGCACCAGTTAAGCCGCTTACGCCGGCGGCCATGGATCTCAGCATGGATGTGCTAGACCTGAGCAAGAAACCCGCACAGGTGCCAGCCACAACCGCCACTCCGGTAACCGAACTGGCCACAGCCCTGgagcagcaacatcagcagcagcagcagctgctcctgGCCCAGCAGCAACTCTTTGGAGCGGGCGATGCAGCCCACCAGTACATGCAGCAGCTGTTCCGCAATCTAATGTTCCAGCAAACCTCGGCCTTTCCCTTCTTTGGCTTTCCACTGGCTCCGCCGCCGCCCACCAATGCGCCGGTCAATGGCACCGCAGACAAGCCCATGGCCCCGAGTCCACCCCAGCGGCTTGGCCTTGGTCCCGTGGGTGTgcccgtgcccgccggtggtccCGTCAAGATGGTCATCAAGAATGGTGTGCTGATGCCCAAGCAGAAGCAGCGTCGCTACCGCACCGAGCGTCCCTTTGCCTGTGAGCACTGCTCGGCCAGGTTCACGCTGCGCTCCAACATGGAGCGGCATGTGAAGCAACAGCATCCCCAGTTCTATGCCCAGCGTCAGCGGAGTGGACATCATGTGATGCGGGGACGCGGTGCCTCCaatgcagctgctgccgcgGCTGCTGCGGCGGCTGCAGCGGCCGCCATGGGTCCCCACAACCATGCACCCATCTCCGAGCAGGTGAAGTATGCCATCCTGGcgcagcagctgaaagcacaCAAGAACACGGACCTGCTGCAGCAGGCCCTCGTCCAGGGTTCCAGCAGTGTGGCCCACAATACTCTCCTCAACTTCGGCTACAATCCGCACCCCCAGACCAATGGCAATGGCCAGGTGGTGAGCGCCTTGGACGATGATGAGCCCAAGCTGGTCATAGACGAGGACGAGGCGGAGGAGGTGGAAGAGTTTGAGGAGATGGACGATGAGGAGGatgacgaggaggaggaggaggaggaaatGCTGGAGCCGGAAATGCCACAGCCAGCCACCCCCACTCCGGCTCCCGCCATTGAGGCGGCCAAGAAGGTGGCCGAAACCATACTCGAGCAGGCCATCAAGGCGGGCAAGCCCACCCCACCGCCGCCAGTCAGTCCCGAGCCCGCCGCCACACCTGCTGCGCCCCCACCACCACACACCATGAAAACCATGATTGCTCAGGCCGAGTCCGTGGCCAAATCTTTGAAAGACGTGGCCAGCTCCCCCTTTAAGGACGAATCTCAGGATCTGGTGCCGGTGGCCAAGCTGGTGGACAATGCCACCAGCAACCAGGTGAGCTTCAACAGCTACTTCCGTCCCAGCGACGTGGCCAACCACATGGAGCAAAGCGACGAGGAGGGCCTGGTGGCCTCGGGCAGTGCCAGCGAGAGCAACAACTCCGGCACCGAGGACGTCACCTCCAGCTCGGGCAGCGAGCCGAAGAAGAAGTCCGCCTACAGCCTGGCGCCCAATCGTGTCTCGTGTCCCTACTGCCAGCGCATGTTCCCCTGGAGCAGCTCCCTGCGCCGCCACATACTCACCCACACGGGCCAGAAGCCCTTCAAGTGCTCCCACTGTCCGCTGCTCTTCACCACCAAAAGCAACTGTGACCGCCATCTGTTGCGTAAGCACGGCAACGTGGAGTCGGCCATGTCCGTGTATGTGCCCACCGAGGATGTGAGCGAGCCCATACCGGTGCCCAAGTCGGTGGAGGAGATCGAGCTGGAGGAGCAGCGCCGTCGCCGGGAGGCGGAGCGCCAGGAGCAGGCGGAACGTGAGCGGGAGAAGGAGCGAgagcgggagcgggagcagGAGCAAGAGCGTGAAAGGGAGCGCGAGCGggagcagctgctgcagcaactGGCGGCTGCGGCCCAGCTGAGTCAGCAAATGAATGTGGCGGCCGCTGCGGCGGCTGCAGCCGCTGCCGCCTCTTCCGGCAACGAGTCCGCGGGCGGTGATCTGCCCTACAAGTGTCATCTGTGCGAGGGCTCGTTTGCCGAGCGTTTGCAGTGTCTGGACCACATCAAACTGACCCATGCCCAGGAGTTTGCCCTGCTGTTGGCCAAGGGAGCCATCGAGACGGAGGCACTGGAGCCGCCACAGCCGGCGGTGACAGCTGCCGCCTCCGATGATGAGGCGGGCAGCCGTGGCGGTGCCAAATATCCCGACTATAGCAATCGCAAGGTGATCTGCGCCTTCTGTGTGCGCCGCTTCTGGTCCACCGAGGATTTGCGTCGTCATATGCGCACCCATTCGGGCGAGCGACCCTTCCAGTGTGAGATTTGCTTGCGCAAGTTCACGCTGAAGCACAGCATGCTGCGTCACATGAAGAAGCACAGTGGACGGGCGCATAATGGTGAGTTACCCGGCTCGGATTGTTCCGATGATGAgcaggtaaccacaccgcccAGCACACCCTTGCCCAttaaccacaacaacaacaacaataacaacaacagcaacaacaacaacaatgtcaACTCCAAGCTGGGTCTGCGCCTGCCCAAGCTGCACGAGCTGCTGGACAAGGCCAATGAGTGGCGTGCCAGTCGCCTGGGCGAGCACAAGGAGAACATAGGCGAGGCCACACCCTCGGCCCACTCCACAGCCGGCTCGGTGGCCGGTTCGGATCTGATAGGCAATCTGTTGGGCATCAGTGATCAGGGTATACTGAATAAGTTGCTCTCATCGGCCGATGAGGCGGCCAAGTTGCTGGGAGTGGACAAGTAA
Protein Sequence
MLATQKPTHESDMERPRRDSTTSESSLEHLDLGRTPKKLSSNSGAPQPTSTPHEVSSVSRKRKLRQQQQHQPQQQQQQPAHQLSAASEDEFEEQLEATAAAAVAAVQRPRHKQRRNAAAAAAIVAAAASASIVMDYSAGDVNSLRKKFRLNRSSVSTLNGELSESGFVDGSGSGFLLSNHSGAALAAASVNSSNNQASASVLASSSASSGASSPQGLCLSSAESGIGAGDEHMKYLCPICEVVSATPHEFTNHIRCHNYANGDTENFTCRICSKVLSSASSLDRHVLVHTGERPFNCRYCHLTFTTNGNMHRHMRTHKQHQTTAATQSASGSLSAQQQQQQHRRQQQHQQQQQQQLGANSGQNSTGTGRAESYESDASCSTDVSSANSQSSSSQTNNNSHKATNREAAGKLKTNHNNNIMDDGGEEEEEPEEEEEEDEEVDVALPLSITSTPDVDTLLAGAGPGSGAASPVPSLGLSCPACGASDFDTLPGLCAHLDAQHGDIPAKCRDCDVIYATHRQLQSHCCRAAVGGGMPPLLGVSSSPLHETHGEQDADEEEDEEEEEEARQQASASQREDFFQQLYLKGKGPTSPPSPIKHEPADSKDLADIQSILNMTSSSCTSNFLRNFEQSVNTPCSSQYSLDGRDGEEEAQDVFTSEFRRMKLRGEFPCKLCTAVFPNLRALKGHNRVHLGAVGPAGPFRCNMCSYAVCDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHGKTSREEVKRAIVYHPAEDASCDESSKSRLGDELNELSFRSVTPPPPAIESSSQLKHMLMAETQPQQPPQSQQQQQQQPPPPPLKIQVKSLDQLVDKPAPVKPLTPAAMDLSMDVLDLSKKPAQVPATTATPVTELATALEQQHQQQQQLLLAQQQLFGAGDAAHQYMQQLFRNLMFQQTSAFPFFGFPLAPPPPTNAPVNGTADKPMAPSPPQRLGLGPVGVPVPAGGPVKMVIKNGVLMPKQKQRRYRTERPFACEHCSARFTLRSNMERHVKQQHPQFYAQRQRSGHHVMRGRGASNAAAAAAAAAAAAAAMGPHNHAPISEQVKYAILAQQLKAHKNTDLLQQALVQGSSSVAHNTLLNFGYNPHPQTNGNGQVVSALDDDEPKLVIDEDEAEEVEEFEEMDDEEDDEEEEEEEMLEPEMPQPATPTPAPAIEAAKKVAETILEQAIKAGKPTPPPPVSPEPAATPAAPPPPHTMKTMIAQAESVAKSLKDVASSPFKDESQDLVPVAKLVDNATSNQVSFNSYFRPSDVANHMEQSDEEGLVASGSASESNNSGTEDVTSSSGSEPKKKSAYSLAPNRVSCPYCQRMFPWSSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNVESAMSVYVPTEDVSEPIPVPKSVEEIELEEQRRRREAERQEQAEREREKEREREREQEQEREREREREQLLQQLAAAAQLSQQMNVAAAAAAAAAAASSGNESAGGDLPYKCHLCEGSFAERLQCLDHIKLTHAQEFALLLAKGAIETEALEPPQPAVTAAASDDEAGSRGGAKYPDYSNRKVICAFCVRRFWSTEDLRRHMRTHSGERPFQCEICLRKFTLKHSMLRHMKKHSGRAHNGELPGSDCSDDEQVTTPPSTPLPINHNNNNNNNNSNNNNNVNSKLGLRLPKLHELLDKANEWRASRLGEHKENIGEATPSAHSTAGSVAGSDLIGNLLGISDQGILNKLLSSADEAAKLLGVDK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00920114;
90% Identity
-
80% Identity
-