Lfen009102.1
Basic Information
- Insect
- Lordiphosa fenestrarum
- Gene Symbol
- ZNF296
- Assembly
- GCA_035044985.1
- Location
- JAWNNO010002727.1:123344-124853[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.00013 0.0083 16.9 0.1 1 21 170 190 170 193 0.90 2 8 1.2e-06 7.6e-05 23.3 2.2 2 23 215 237 214 237 0.94 3 8 3.5e-05 0.0022 18.7 0.0 2 23 260 280 260 280 0.97 4 8 3.3e-05 0.0021 18.8 0.6 1 23 286 308 286 308 0.97 5 8 1.3e-05 0.00081 20.1 1.2 2 23 315 336 315 336 0.97 6 8 4.1e-08 2.6e-06 27.9 1.1 1 23 342 364 342 364 0.98 7 8 0.36 23 6.1 0.6 1 21 370 390 370 394 0.86 8 8 0.00038 0.024 15.4 0.1 1 22 436 457 436 460 0.91
Sequence Information
- Coding Sequence
- ATGAGCTCATTGGATACTCAACTCAATATAAATGCTCAAACCTGTCGTGTTTGCCTGGCAAATCATGAAGAAACGAGCCTGCATCTGCATGATGAAATCGAATACAATGAGCTGAACATGCAGCTCTGGGAGTTGCTGGAAAATGTGTCCAAAGTAAAGTTCACCTGGAATGAACCCAATCTGCCCACGCAACTGTGCCAGAATTGCGCACGCCGCTTAATTAGTTCCCATGAATTTATAAGGGAAGTAGAAAAATCCCAACAGACGCTCCAGGACTTCTACGAGAATCTTAAGACAAATACCATTGTGACAGAACATGAGGAACATCCACCAGTTCAACAAGAGGAGGCTAAggtggatgatgatgatgagaatGTCATTGAGTTTGAGGGCGAGGACGAGGAGTTGCTGGACAGAGATGTGGAGGAAAATGTCACACTGCTAGAGTCGCCCGCTTTACGCACCTCACAGCTGGGCAGCCGGTTGAGCTATTCCCAAAAATTCATGTACAAATGTGCCGTTTGTCCGCGCGTCTTTGCCAAGAGCGAATCTCTGGCTCGACACTTTGCTGCTATTCACAGTCAGACAGCAAATGCGGCTGCACAGGAACTGGCCCTTGAGAGCAGTGGTACTGGGGCCCTCACCTGTGAGCACTGTCCGCGTATTTTTAAGCGTCAGGATACACTACGTCGTCATATGCAAGCATTTCACCCGGAAGCTGTCTATGTTCCCGCATCCACAGAAGAATCCTCTACTAAGCGTTCTGCCAAGCGACGAGAGTGCCCCTATTGTGGCATTAGTTTCCCCTCGTCCAGTCTGATCATACACATACGTCGTCATACCGGTGAGAATCCCTACAAGTGTGACCAATGCGAAAAGGCATTTCCACGTAGCCAGGACTTGAGTCTTCATCGGCTTCAGCATACAGGCGAGCGGCCCAATGAGTGCAAAATCTGCTCGAAAAAGTTTATTTCACTAAACAAACTGGCCAGACACATGCGTTTGCATACGGGACAACGTCCATATGCCTGCAACAAATGTGACAAGAGTTTTGTACAATCCAATGATCTAAAGATTCATATGCGCCGCCATACAGGAGAGCGTCCATACCAGTGCGGCATATGTGGCGATAGCTTTGTGTGTGGATCCCTGTTGAATATTCATCGCAATCAGAAGGGACACCGGGAGGACAATATTCAGAATCCAACTGCAATACAAGCCGATCCATATGAAAATGCGCGTGTTAACAAACGTCGAGCGGAGGAAATGGCCAGAATGCACCAACTACGAGATTCAGAGGGTCCCTACAAGTGCGGTGTTTGTGGTTGGAACTTTAAGAGTGGCGCTCTCCTAACCATACATCGCAATAACATGTCGCATTATGAGTTGGGGCAGATAAATTATGGTGATCCATTTGGCGAGAGACAGAAAAAACAGCAACTAATGCAGGATTAA
- Protein Sequence
- MSSLDTQLNINAQTCRVCLANHEETSLHLHDEIEYNELNMQLWELLENVSKVKFTWNEPNLPTQLCQNCARRLISSHEFIREVEKSQQTLQDFYENLKTNTIVTEHEEHPPVQQEEAKVDDDDENVIEFEGEDEELLDRDVEENVTLLESPALRTSQLGSRLSYSQKFMYKCAVCPRVFAKSESLARHFAAIHSQTANAAAQELALESSGTGALTCEHCPRIFKRQDTLRRHMQAFHPEAVYVPASTEESSTKRSAKRRECPYCGISFPSSSLIIHIRRHTGENPYKCDQCEKAFPRSQDLSLHRLQHTGERPNECKICSKKFISLNKLARHMRLHTGQRPYACNKCDKSFVQSNDLKIHMRRHTGERPYQCGICGDSFVCGSLLNIHRNQKGHREDNIQNPTAIQADPYENARVNKRRAEEMARMHQLRDSEGPYKCGVCGWNFKSGALLTIHRNNMSHYELGQINYGDPFGERQKKQQLMQD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00914707;
- 90% Identity
- iTF_00914707;
- 80% Identity
- -