Basic Information

Insect: Lordiphosa fenestrarum
Gene Symbol: -
Assembly: GCA_035044985.1
Location: JAWNNO010005544.1:151855-153737[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.00039 0.025 15.4 5.0 2 23 132 153 131 153 0.98

2 9 8.6e-07 5.5e-05 23.7 3.1 1 23 159 181 159 181 0.99

3 9 5.6e-07 3.6e-05 24.3 1.0 1 23 187 209 187 209 0.99

4 9 1.6e-05 0.001 19.7 3.3 1 23 277 299 277 299 0.99

5 9 5.1e-06 0.00032 21.3 0.8 1 23 305 327 305 327 0.98

6 9 1.6e-06 0.0001 22.9 5.6 1 23 333 355 333 355 0.99

7 9 1e-06 6.4e-05 23.5 0.7 3 23 474 494 472 494 0.98

8 9 8.9e-06 0.00057 20.5 0.5 1 23 500 522 500 522 0.99

9 9 1.7e-07 1.1e-05 26.0 2.2 1 23 528 550 528 550 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.00039	0.025	15.4	5.0	2	23	132	153	131	153	0.98
2	9	8.6e-07	5.5e-05	23.7	3.1	1	23	159	181	159	181	0.99
3	9	5.6e-07	3.6e-05	24.3	1.0	1	23	187	209	187	209	0.99
4	9	1.6e-05	0.001	19.7	3.3	1	23	277	299	277	299	0.99
5	9	5.1e-06	0.00032	21.3	0.8	1	23	305	327	305	327	0.98
6	9	1.6e-06	0.0001	22.9	5.6	1	23	333	355	333	355	0.99
7	9	1e-06	6.4e-05	23.5	0.7	3	23	474	494	472	494	0.98
8	9	8.9e-06	0.00057	20.5	0.5	1	23	500	522	500	522	0.99
9	9	1.7e-07	1.1e-05	26.0	2.2	1	23	528	550	528	550	0.98

Sequence Information

Coding Sequence: ATGCATCTGAATCATGCCACAGCCGCTTCAGCGGCCATGGCCAACTATCAGCAGCATTATGCGCCCGCCCAGCTGGCCACCCATGGATCAGGTGGGGGCGGCGGCTCCGGTCCCAATGCATTGCAGCAGCCCACCACATTGGCCAGCCTTCAGCAGAGTCCATTTGCCCTGCACCAACTGACCGCTGTCCAGGCCATACAACATCCCACCCATCAGGCTATGCTGCATCCGCAGCACCCGCTGGTGCACCTGCTAGACATCTCAACAACCTCAGCGAATAGCCTCGGCGGTGGCGGGGGCAGTCACACGCCCATATCGCCCATGAAGCAGGAGGTGCAGAGTGTCATCAGTGAGGAAGACGCCTCGGTGGTGGATGATCCGCGCAAGAAGAAACAGTGCCACGTGTGCAAGAACAAGTTCCGACAACTGACCACGTTACGCAACCACATGAAAATCCACACGGACGAACGGCCCTACAAGTGCAAGCACTGCGACAAGGCCTTCCGTCAGATCTCCACGTTGACAAATCACGTGAAAATCCATACGGGCGAAAAGCCGTTCACCTGCAACATCTGCGCCAAGGACTTTCGCCAGCAGAGCACGCTGATTAACCACATCAAGACGCACAAGGCGGCGGAGTCGAGCACGCCTACGTCGCTTCTGAACTACCAGCCACCGCAGCCGTCCTCCGCCACGGGCAAACGTAAATCCCAGGCGAATCAGATGCtctaccagcagcagcaacagcatcagcagcgGGTACAAATCTCAAAGACTCTATACTCGGGCAGCTACAGCTCGCCGCAGGCCGAGGAGCTAGTGAAACCGTATCAGTGTAGCGTATGCAAGCGGCGCTTCCCTCAGCTGAGCACCCTGCACAACCACGAGCGGACGCACATCGATCCCAAGCCGTACAAGTGTGAGACTTGCGAGAAATCCTTCAGCCAGCTGGCCACGCTGGCCAATCACAAAAAGATCCATACGGGCGACAAGCCGTACACGTGTTCCTACTGCCATCTGCAGTTCCGCCAGCAGAGCACCCTCACCAATCACATGAAGACGCACACGCATCTGCACGCCAGCTCCGGCTCACAGCCGGGGGTGGGCCCAGTCACAGTGGATCACACGATGCCAGCTCCCTTGGCGCCCGGCACCCACCAGCTGACGAGCGGAGGACTACTGCCCAACAACCTGCACAGCACAACACCGAATGCCCTCATCCAGCTGGATCACCATCCGCTCTTGCACTTCCTCGATGGCAGCACCACGGTTAGCTCGGTGGTGGCCTCGGCAGCGGCAGCCACCACCAAGCTGGAGCACTTTCAGAGCCCATCTTCACCCTCTGGCGGCGGCGGTCGCATAAGCATCGTGGGCAACATCAACATGCTGAAGGGCGAAAATCCAGATCGACCGTTTGGCTGCAGCGTCTGTGGCCGATTCTTCTCCCAGCAGAGCACTTTAGTCAATCACATCAAGACGCATACGGGCGAGAAGCCATACAAGTGCAAGATCTGTGAGGTAAACTTTCGGCAGGTGGCCACGCTCAACAATCACATGAAGATCCATACGGGAGAGAAGCCCTACAACTGTTCCTACTGCCCGAAGCAGTTCCGGCAGAAAAGCACACTGCAGAATCATCTAAGGGTGCACACGTGCTAg
Protein Sequence: MHLNHATAASAAMANYQQHYAPAQLATHGSGGGGGSGPNALQQPTTLASLQQSPFALHQLTAVQAIQHPTHQAMLHPQHPLVHLLDISTTSANSLGGGGGSHTPISPMKQEVQSVISEEDASVVDDPRKKKQCHVCKNKFRQLTTLRNHMKIHTDERPYKCKHCDKAFRQISTLTNHVKIHTGEKPFTCNICAKDFRQQSTLINHIKTHKAAESSTPTSLLNYQPPQPSSATGKRKSQANQMLYQQQQQHQQRVQISKTLYSGSYSSPQAEELVKPYQCSVCKRRFPQLSTLHNHERTHIDPKPYKCETCEKSFSQLATLANHKKIHTGDKPYTCSYCHLQFRQQSTLTNHMKTHTHLHASSGSQPGVGPVTVDHTMPAPLAPGTHQLTSGGLLPNNLHSTTPNALIQLDHHPLLHFLDGSTTVSSVVASAAAATTKLEHFQSPSSPSGGGGRISIVGNINMLKGENPDRPFGCSVCGRFFSQQSTLVNHIKTHTGEKPYKCKICEVNFRQVATLNNHMKIHTGEKPYNCSYCPKQFRQKSTLQNHLRVHTC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00901644;
90% Identity: iTF_00919261;
80% Identity: -