Lfen003495.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lordiphosa fenestrarum
Gene Symbol
su(Hw)
Assembly
GCA_035044985.1
Location
JAWNNO010000923.1:21729-25278[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.0011 0.071 14.0 2.0 1 20 216 235 216 237 0.93
2 12 3.6e-06 0.00023 21.8 0.4 3 23 288 309 286 309 0.93
3 12 0.075 4.8 8.2 0.1 1 23 315 337 315 337 0.95
4 12 7e-07 4.5e-05 24.0 2.4 1 21 344 364 344 365 0.95
5 12 8e-06 0.00051 20.7 1.0 2 23 377 398 376 398 0.96
6 12 0.00014 0.0086 16.8 5.3 1 23 409 431 409 431 0.99
7 12 0.0001 0.0067 17.2 0.9 1 23 437 459 437 459 0.97
8 12 1.2e-05 0.00078 20.1 0.7 1 23 465 487 465 487 0.98
9 12 3.8e-06 0.00025 21.7 2.2 1 23 493 515 493 515 0.97
10 12 0.00014 0.0087 16.8 1.2 1 23 519 541 519 541 0.95
11 12 0.0001 0.0066 17.2 0.6 1 21 549 569 549 573 0.92
12 12 2.3e-05 0.0014 19.3 0.4 3 23 593 614 591 614 0.96

Sequence Information

Coding Sequence
ATGAGCCCCTCCAAGGAGGAGAAAAAGACAGACAAAGAGGGGGAGAGCGATCGGGGAAGCGTCACCAGTGTGGTTAAGGTCGTGGATATTGAGAAACTCACACCGGCGAAGGACAAAAAACGTCCTGCCAAACGCATGAAACTTATTAACGAGTCGATCCCACCCGGGGAAACGTCGCCATCGCCCGCTGTGCAGCCAGAGAAGGAAAAGAAAGAGAAGCGCAACAAAATACTCAATGATGCACCAGTGACCACGGCCCCCAAAGGGGACACACGCGTGAAGATATTAAATGAGAAGTGTATTACACCAGCCACCGTGCCCATAGAGACTACCAAGATTAGGACCTTTTCCACCAAGAAACAGCAGTCAATGGATCACTATGTGCTGCAGGCGGTGAAAAATGAGAACAGCAAAGCGGAAGCCACCACCACCGATGTAGTTATAGCAGCTACTAATGCCATAGATatcgatgatgatgataatacCATAGCCATCATCCTGGCCGATGTGGACGAAATTGAGCATGCTGCGGCAGTCCCTGATAATGGTGAGGAAATTGTGGTGTCTGCCGAAGAGGAGGACGGCGAGGAGGATGAAGAGCACACAGCTGGTCGGACCAACAACACCATGAAAGAGATTGTGGAGCATATTTGTGGCAAATGCTACAAGACATTCCGTCGTGTCAAGAGTCTGAAGAAGCATTTGGAATACTGTCGCTATGACAGTGGCTACCACTTGCGCAAGGCGGACATGTTGAAGAATCTGGAGAAGATCGAGAAAGATGCGGTTGTAATGGAGAAGAAGGACATTTGCTTCTGCTGCAGCGAGAGTTATGATACCTTCCACCTGGGCCATATCAATTGTCCCGATTGCCCCAAGTCCTTCAAGACCCAGACCAGCTATGAACGTCACATATTCATCACCCACTCCGAATTCAATGATTACCCCTGCTCAATTTGCAATGCCAATTTGCGCAGTGAGGCCCTGTTGAAGCTGCATGAGGAGCAGCACAAGTCCCGGGGAAAACCCTACGCCTGTAAGATTTGTGGCAAGGACTTTACGCGCTCCTACCATTTGAAGCGGCATCAGAAGTACTCTTCATGCTCGGCCAATGAGAATGATACCATGAGCTGCAAGGTCTGCGATCGAGTATTTTATCGCTTGGACAATTTGCGTTCCCATCTGAAGCAGCATCTTGGCACCCATGTGGTGAAGAAGCCGGAATATATGTGTCATGTGTGCAAGAATTGCTTCTACAGCTTGTCCACGCTCAACATCCACATACGCACCCACACGGGTGAGAAGCCCTTCGATTGCGATCTGTGCGACAAAAAGTTCTCCGCCTTGGTGGCCCTTAAAAAGCATCGACGATATCACACTGGCGAGAAACCCTACAGTTGCACTGTGTGTAACCAATCCTTTGCCGTCAAAGAAGTGCTCAATCGTCACATGAAACGACACACTGGTGAACGTCCGCATAAATGTAGCGAATGCGGCAAAAGCTTCATTCAGGCCACTCAACTGCGTACGCATTCCAAGGTCCATGTGCGTCCCCATGCTTGCGAATTGTGCGATGAGAAGTTCAAGACCGAAAAGCAGCTCGAGCGCCACGCCAAGGAACACTCTCGCCAGAGGCGTTCCTCTTTCAATTGCTCACAGTGCAAGCGCAGATTTCGTACTTCAGCACTTCTCAAGGATCATATGGACGCTGGCGATCATACACCCAAACCAGAACGCCCCAAGCgctcaaacattaaatttatAGAACGCACTGATTGCGCCATTTGTGACAAAAATTTCGACAGCACCGATACCTTGCGCAAACACATACGCAGTGTCCATGAGTGTGATCCAGATGACATATTCGGCGTAGAGCCACCCTCCAAGCGTGGCAGGAAAGTACTGAAACCGATTATTGAGCCAGATGTTGATGATGTGGCCCTGAACACCTCAGCTGGCTCTTTGATTTCCAGCCAGACCGCTGGCAATGGTGTGGTGGTGCGTGAATTTCTGGTGGATGAGGATGATGGCACCACAGCTCAGACCATTATGCTGGAGAATGAAACCTACACCATATTGCCCTTGGAGGGGGCCATCGAGAGCGAATCGTTGCCAGCGACACCCAGCGTTCATAAGCCGCTGTCCAAAGAGAAGGTCTCGCCTGTCGTGAAGAAAGAGCAACGCAAATCATTGGCAGCCAGTTTGGCAGCTGCCATTGCCGATAACCTAGATGAGGAGGAATTCAATGGCGAAGTGCTAACCGAAGACGATCTAAAATTAAAGGCGAATGTGGCCAAGCTGATTGATATGCTGGTAGATCCACCCATTTTGAAGAAATACGGCTGGCCCAACACTTCCGAGGAGACGGTGCTCTGCAAAGTGATTGAGAATTGCGGTCATGATCTGACCAAAGGTGGGGAGAACTACGCCGAACTGGACTATGGCAGCCGCATGCGTGAATACTGCAAGCTATTGTTCACGGTGGTCATACACAATGATTCCATCAAAGCATTGCTCAATAATTTTCCCATTGACGATGTGATTGAATATGTCTTGGGCGACGAGGACCAGGATGAAGGCAGCGATGACAGGGATGATGCCATCGATATTCATGACGACGAAGAGGCCGATGAGTCGGATGACAAGGAAGAGGAAGTCGCTGCAAAGGCTTAA
Protein Sequence
MSPSKEEKKTDKEGESDRGSVTSVVKVVDIEKLTPAKDKKRPAKRMKLINESIPPGETSPSPAVQPEKEKKEKRNKILNDAPVTTAPKGDTRVKILNEKCITPATVPIETTKIRTFSTKKQQSMDHYVLQAVKNENSKAEATTTDVVIAATNAIDIDDDDNTIAIILADVDEIEHAAAVPDNGEEIVVSAEEEDGEEDEEHTAGRTNNTMKEIVEHICGKCYKTFRRVKSLKKHLEYCRYDSGYHLRKADMLKNLEKIEKDAVVMEKKDICFCCSESYDTFHLGHINCPDCPKSFKTQTSYERHIFITHSEFNDYPCSICNANLRSEALLKLHEEQHKSRGKPYACKICGKDFTRSYHLKRHQKYSSCSANENDTMSCKVCDRVFYRLDNLRSHLKQHLGTHVVKKPEYMCHVCKNCFYSLSTLNIHIRTHTGEKPFDCDLCDKKFSALVALKKHRRYHTGEKPYSCTVCNQSFAVKEVLNRHMKRHTGERPHKCSECGKSFIQATQLRTHSKVHVRPHACELCDEKFKTEKQLERHAKEHSRQRRSSFNCSQCKRRFRTSALLKDHMDAGDHTPKPERPKRSNIKFIERTDCAICDKNFDSTDTLRKHIRSVHECDPDDIFGVEPPSKRGRKVLKPIIEPDVDDVALNTSAGSLISSQTAGNGVVVREFLVDEDDGTTAQTIMLENETYTILPLEGAIESESLPATPSVHKPLSKEKVSPVVKKEQRKSLAASLAAAIADNLDEEEFNGEVLTEDDLKLKANVAKLIDMLVDPPILKKYGWPNTSEETVLCKVIENCGHDLTKGGENYAELDYGSRMREYCKLLFTVVIHNDSIKALLNNFPIDDVIEYVLGDEDQDEGSDDRDDAIDIHDDEEADESDDKEEEVAAKA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00916434;
90% Identity
iTF_00916434;
80% Identity
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