Basic Information

Insect: Lordiphosa fenestrarum
Gene Symbol: -
Assembly: GCA_035044985.1
Location: JAWNNO010006215.1:325914-327452[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 2.7e-06 0.00017 22.2 0.8 1 23 111 133 111 133 0.97

2 13 1.6e-07 1e-05 26.0 1.6 1 23 139 161 139 161 0.99

3 13 2.1e-06 0.00014 22.5 5.6 1 23 167 189 167 189 0.99

4 13 1e-06 6.5e-05 23.5 2.3 1 23 195 217 195 217 0.99

5 13 2e-05 0.0013 19.4 6.5 1 21 223 243 223 247 0.91

6 13 1.5e-08 9.4e-07 29.3 3.4 1 23 253 275 253 275 0.99

7 13 0.43 27 5.8 0.1 1 21 303 323 303 324 0.93

8 13 3.3e-06 0.00021 21.9 4.0 1 23 331 353 331 353 0.99

9 13 5e-07 3.2e-05 24.5 3.3 1 23 359 381 359 381 0.98

10 13 0.0009 0.058 14.2 7.3 1 23 387 409 387 409 0.99

11 13 1e-07 6.4e-06 26.7 1.9 1 23 415 437 415 437 0.99

12 13 0.0078 0.5 11.3 6.0 1 23 443 465 443 465 0.98

13 13 4.1e-05 0.0026 18.5 1.7 1 23 471 493 471 493 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	2.7e-06	0.00017	22.2	0.8	1	23	111	133	111	133	0.97
2	13	1.6e-07	1e-05	26.0	1.6	1	23	139	161	139	161	0.99
3	13	2.1e-06	0.00014	22.5	5.6	1	23	167	189	167	189	0.99
4	13	1e-06	6.5e-05	23.5	2.3	1	23	195	217	195	217	0.99
5	13	2e-05	0.0013	19.4	6.5	1	21	223	243	223	247	0.91
6	13	1.5e-08	9.4e-07	29.3	3.4	1	23	253	275	253	275	0.99
7	13	0.43	27	5.8	0.1	1	21	303	323	303	324	0.93
8	13	3.3e-06	0.00021	21.9	4.0	1	23	331	353	331	353	0.99
9	13	5e-07	3.2e-05	24.5	3.3	1	23	359	381	359	381	0.98
10	13	0.0009	0.058	14.2	7.3	1	23	387	409	387	409	0.99
11	13	1e-07	6.4e-06	26.7	1.9	1	23	415	437	415	437	0.99
12	13	0.0078	0.5	11.3	6.0	1	23	443	465	443	465	0.98
13	13	4.1e-05	0.0026	18.5	1.7	1	23	471	493	471	493	0.98

Sequence Information

Coding Sequence: ATGACCTGCCCTGCAAAGAACCTCAATGTGGCCGAGCTATGTTGCGTTTGCATGTGCAGCTCGGGCGGCTCTGGTGGCAACACCACCTGGCAGAATATATACATCACCGGCTCCGACACGGAAACCAAGTGCATGACCATAATAGAGGAAGTAACTGGCCGAATGGTTAAACCTGATGAGGATCTACCTGAAAGGATATGTCCCGCATGCCTGACAGCGGCAATGATTGCTTTCAATTTCAAGCGGCGTTTTGAGAAGAGCCTGAGGTGCTTAAAGGAAGAGCAGAGTTTGGCAATAAAAGAGAGCGAGGGACAGACCTCGCAACGACCCTTTGCATGTGAACTCTGCTCCAAGTCCTTTGCCAAAAAGGCCACTCTAAAAGATCACCTACGCACTCACACGGGGGATCGACCTTACGAATGTACACAGTGTTCGAGAACCTTTGGCCAGAAAAGCAATCTTACGGTGCACCTGCGTACTCATACAGCTGAACGACCCTACGAATGTGCCCACTGCTCGAAAAGCTTCAGCCATAAAAGTACTTTAAGGCAACACCTGCTTACGCACACCGACGAACGACCCTTTCAATGTTCCCAATGCACCAAGGCATTTAGCCAAAAGAAATATCTAACGGATCATCTGCGTATACATACGGGAGAAAAGCCCTTTAAGTGTTCCCACTGCTCGAAGACCTTTAGCCAAAAAAGTTCCCTAAGGAATCACCATTATTCATCCATTCATACCGGGGAACGTTCCTTCAAGTGTTCCATATGCTCAAAGAGCTATAGCCAAAAGAGTAATCTTACCAAACATCTGCGAACTCATAATAATGAACACACCATTGGACACTTAAGGACAAAAGTAAAACCAGAGAATCACCTTTACATTCATACTGACGAAACAACATTTGAGTGCTCTCCTTGCTCCAAGACCATTAGCTTCAAGGACGATCTAGCGAGTCACAATCGAGCTGATACGGTGGACCGACCCTTCAAGTGTTCCCAATGCACACAAACATTTAACCGAAAGGATAATCTTACCGAGCACTTTCGTACTCACACTGGCGATCGACCCTACAACTGTACCCACTGCTCGAAGACCTTTATAAGGAAGGTCAATCTGGAGGATCACCTTCGCACTCATACTGGAGAAAGGCCCTTCGAGTGCTCCCACTGCTCAAAGACTTTTCATCTAAAAAGTTCTTTTGGAAAGCACCTGCGCACTCATACTGCGGACCGGCCATTTAAGTGTTCCCAATGCTCGAAGACCTTTAGCCAAAAAGGTAATCTAACAGAGCACCTACGTATACATACTGGTGAACGACCCTACGAATGTGCTCACTGTTTGAAGAGATTTGTTACAAAGTGTGCTCTGGATAATCACCTTCACACCCACACTGCAGAGCGGCCCTTTGAGTGTTCCCAGTGTTCGGCGAAGTTTGGTCAAAAGCGCACCCTACAGAATCACCTACGCACTCATGGGAAGGGGGCAGAAATCCAGGCTGATTTTGAAGCAACCGATAGCCATAGATTAAGCTAG
Protein Sequence: MTCPAKNLNVAELCCVCMCSSGGSGGNTTWQNIYITGSDTETKCMTIIEEVTGRMVKPDEDLPERICPACLTAAMIAFNFKRRFEKSLRCLKEEQSLAIKESEGQTSQRPFACELCSKSFAKKATLKDHLRTHTGDRPYECTQCSRTFGQKSNLTVHLRTHTAERPYECAHCSKSFSHKSTLRQHLLTHTDERPFQCSQCTKAFSQKKYLTDHLRIHTGEKPFKCSHCSKTFSQKSSLRNHHYSSIHTGERSFKCSICSKSYSQKSNLTKHLRTHNNEHTIGHLRTKVKPENHLYIHTDETTFECSPCSKTISFKDDLASHNRADTVDRPFKCSQCTQTFNRKDNLTEHFRTHTGDRPYNCTHCSKTFIRKVNLEDHLRTHTGERPFECSHCSKTFHLKSSFGKHLRTHTADRPFKCSQCSKTFSQKGNLTEHLRIHTGERPYECAHCLKRFVTKCALDNHLHTHTAERPFECSQCSAKFGQKRTLQNHLRTHGKGAEIQADFEATDSHRLS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00914659;
90% Identity: -
80% Identity: -