Lfen012303.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lordiphosa fenestrarum
Gene Symbol
-
Assembly
GCA_035044985.1
Location
JAWNNO010003804.1:846923-848518[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.00021 0.013 16.2 5.9 1 23 122 144 122 144 0.99
2 15 1.8e-06 0.00012 22.7 2.2 1 23 150 172 150 172 0.99
3 15 8.3e-07 5.3e-05 23.8 3.2 1 23 178 200 178 200 0.98
4 15 5.5e-07 3.5e-05 24.4 1.8 1 23 207 229 207 229 0.99
5 15 8.6e-05 0.0055 17.4 1.2 3 23 237 257 235 257 0.96
6 15 3.7e-05 0.0024 18.6 6.2 1 23 263 285 263 285 0.98
7 15 2.1e-05 0.0013 19.4 8.5 1 23 291 313 291 313 0.99
8 15 1.7e-05 0.0011 19.7 1.1 1 22 319 340 319 340 0.96
9 15 0.00024 0.015 16.1 6.0 1 23 343 365 343 365 0.99
10 15 5.6e-06 0.00036 21.2 3.6 1 23 371 393 371 393 0.99
11 15 2.4e-07 1.6e-05 25.5 3.3 1 23 399 421 399 421 0.98
12 15 0.32 21 6.2 1.7 1 23 427 449 427 449 0.92
13 15 8.3e-08 5.3e-06 26.9 1.6 1 23 455 477 455 477 0.98
14 15 5e-07 3.2e-05 24.5 0.7 1 21 483 503 483 504 0.96
15 15 0.37 23 6.0 2.2 3 22 509 528 507 528 0.93

Sequence Information

Coding Sequence
ATGGCCCACGGAGCAAAAGCACAGGGGCAAAATGTGGCCGAGCTATGCTGCGTTTGCATGTCCCGTCCAAAAGGTGGCAGAGACTGGCTGAATGTATTCACCGACTCCAATTCCGACCAGGAACCAAACTTGATGGTCATAATAGAGGAGGTAACTGGCCGTTTGGTAAAACCTAATGAGGATCTACCTGAAGGAATATGCGATTCCTGCTTGGCAGCCTTAAAAATTGCATTGAAATTCAAGCGGCGTTTTGAGAGGAGCTTTCAGTGCCTGAACGAGCAGAACGAAAACAAGGAGGAACGCTTGGAGAGCGAGGCGGAAGATTTCGTATTCCTCTCGGGAGATGAAAGCACTGCCACTAGGTTCGAATGTTCCTACTGTTCAAAGAGCTACACCTGTAAGAGCAGCTTAAAGTATCATATTCGCACACATACTGGAGAACGTCCCTTCAAATGTGCACACTGCTCGATGGCATTTAGCCAAAAGGTCAATCTAAACGTGCATCAGCGGTCACACACTGGCGAACGACCTTTCGTTTGCACCCTCTGCTCCAAGGCCTTCAAACATAAATGGAATCTAAAGGATCACCTTCGCACTCATACAAACGAGCGAAACTACTTCAAGTGTTCCGAGTGCTCGCTGACGTTTACACAAAATGGCAGCCTACAAAAACACCTTCGCAGTCATGCGGATGATCAGCATTTTGGATGTTCCCTGTGCTCGAAAACCTTCAAGAAAAACAGCGATTTGATGAATCACCTTGGCAGTCACACGGGCGAACGACCTTTTGAATGCTCCCACTGCTTCAAGACCTTTATGCTGAACAGCCATCTAACCAGACACCTTCGCATTCATGCTGGTGAGCGTCCGTTCAAATGTAGCCACTGCTTGAAGAGCTTTTCCTTTAAGCACAATCTAAAGTTGCATCTTCGCACTCATACGGACGATCGACGCTTTCAATGTACCCACTGCTTGAAGACTTTTACCCAAGATGCCAGTCTGAAGGAGCACATGCGTATTCAGCGCTATGAGTGTACCCACTGCTCGAGCAGTTTTTGCGGAAAACGAAATCTACAATTGCATCTTCGTACCCACACGGACAAACAACCCTTTAAATGTTCCCACTGCTCAAAGATGTTTGGAACCAAACGCAATCTGGAGAATCATGTTCTCACTCATTCCGATGAGCCGGCCTTCGAGTGTGAGCACTGTTCGAAGACTTTTAACCAAAAAGGCAGTCTACAGAAACACCTACGCATTCATACCGGTAATCCAACATTTGACTGTATCCACTGCTCGAAAACCTTTTGGCAAATAAGCGTTTTAAAGACTCACCTGCTGACGCATACGGGTGAACGACCCTTTGAATGTCCTCACTGTGCAAAGACTTTTGCACAGAAGAGCAATTTGAAGAAGCATCTGTTGATTCACTCTGGCGAACGACCGTACGAGTGTACCTACTGCTCCAAGACATTTACACAGAAGGGCAATCTAATGGTGCATCTACGCAATCAACGCATGGAttgcaaaaaatgtttggaGAGTTTTTGCGGAACGCTAAATCTACAGGCACATGTATGTACTCAACCGGAATGA
Protein Sequence
MAHGAKAQGQNVAELCCVCMSRPKGGRDWLNVFTDSNSDQEPNLMVIIEEVTGRLVKPNEDLPEGICDSCLAALKIALKFKRRFERSFQCLNEQNENKEERLESEAEDFVFLSGDESTATRFECSYCSKSYTCKSSLKYHIRTHTGERPFKCAHCSMAFSQKVNLNVHQRSHTGERPFVCTLCSKAFKHKWNLKDHLRTHTNERNYFKCSECSLTFTQNGSLQKHLRSHADDQHFGCSLCSKTFKKNSDLMNHLGSHTGERPFECSHCFKTFMLNSHLTRHLRIHAGERPFKCSHCLKSFSFKHNLKLHLRTHTDDRRFQCTHCLKTFTQDASLKEHMRIQRYECTHCSSSFCGKRNLQLHLRTHTDKQPFKCSHCSKMFGTKRNLENHVLTHSDEPAFECEHCSKTFNQKGSLQKHLRIHTGNPTFDCIHCSKTFWQISVLKTHLLTHTGERPFECPHCAKTFAQKSNLKKHLLIHSGERPYECTYCSKTFTQKGNLMVHLRNQRMDCKKCLESFCGTLNLQAHVCTQPE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-