Lfen000185.1


Basic Information
Transcription Factor Domain
Sequence Information
Similar Transcription Factors

Basic Information

Insect
Lordiphosa fenestrarum
Gene Symbol
-
Assembly
GCA_035044985.1
Location
JAWNNO010000030.1:123738-126875[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.008 0.51 11.2 11.4 1 23 133 155 133 155 0.98
2 17 7e-06 0.00045 20.9 3.5 1 23 163 185 163 185 0.99
3 17 2.9e-06 0.00019 22.1 0.7 1 23 191 213 191 213 0.99
4 17 4.4e-07 2.8e-05 24.7 4.2 1 23 219 241 219 241 0.99
5 17 2.9e-07 1.9e-05 25.2 0.9 1 23 247 269 247 269 0.99
6 17 7.7e-05 0.0049 17.6 6.7 1 23 275 297 275 297 0.99
7 17 9.9e-06 0.00063 20.4 4.1 1 23 303 325 303 325 0.98
8 17 2.6e-07 1.7e-05 25.4 0.6 1 23 331 353 331 353 0.99
9 17 1.9 1.2e+02 3.8 0.8 1 12 359 370 359 372 0.90
10 17 3.4e-06 0.00022 21.9 8.1 1 23 475 497 475 497 0.98
11 17 2.6e-05 0.0017 19.1 2.1 1 23 503 525 503 525 0.97
12 17 0.09 5.8 7.9 7.0 1 23 531 553 531 553 0.98
13 17 6.9e-06 0.00044 20.9 7.8 1 23 559 581 559 581 0.99
14 17 1.1e-05 0.00072 20.2 3.3 1 23 587 609 587 609 0.99
15 17 0.035 2.2 9.2 6.4 1 23 615 637 615 637 0.98
16 17 4.4e-07 2.8e-05 24.6 4.0 1 23 643 665 643 665 0.99
17 17 2.1e-05 0.0014 19.4 5.0 1 23 671 693 671 693 0.99

Sequence Information

Coding Sequence
ATGACCTACAGAGCTAGAGGAGCCCAAGAGCAATGCCGCGTTTGCATGGCCTGTTGGGCAGAAGGCACCAACTACAACAACTGGCGAAATATATTCACCGACTCAGACGCCGGACAAGACAACTTATTGCTTATAATCCAGGAAGTGACTGGACACGAGGTTAAACAGGATGGTAAACTACCAGAAAGCATATGCCCCTCATGCCTGGCAGCGGCTAAGACagcatttaattttaagcgTCGTTTAGAGAAGAGTCTTCAGCTGCTGGAGCAGAATGGTTGGAGACACGAGGAATTGTTGCAAGTTACTCCAGAGGAGACAGTTAACAGCATAAGGGAACAAAATGATTTGGAATCTCTTACAGCAGCAAAACATAGCGAAGACAAACAACGACCCCACAAGTGTGCCCACTGTCCGCATAAATTTGCCcacaaatgcttgcttaagcGACATCTTCGCATTCACGCTAACAATAGGGAGCGAGCCTTTCAATGTACCCACTGCCCGAAAACATTTACAGAAATTAACTATCTAAACCAACATCTGCGTACACATACCGGCGAGCGACCTTTCAAATGTACCCAGTGTCCGAAAACATTTAGCTTACTTGCCAATCTCAGCAGTCACCTTCGCATTCATACTGGAGAGCGTCCATTTAAGTGCACCCACTGCTCGGAGACCTTTGCCCAAAGCGGCAATCTAAAGcgacacacacgcactcatACAGGCGAACGACCCTTCGAGTGTCCACACTGCTCGGAAACCTTTGGCGGAAAAGGCAATCTACAGAGACACATACGCACACATACTGGAGAGAAACCCTTCAAATGTTCCCACTGCTCCAAATCATTCGCAGAAGAATGCAATCTTAACCAACATCGACGCACTCACACTGGGGAAAGACCCTTTAAATGCACCCTCTGCTCGAAAACGTTTGTCCAAAGCAGTTGTCTAAATCGGCACCTAGTCACTCACACCGGCGAGCGACCTTTCCAGTGTACCCAGTGTCCGAAGTCTTTTAGAGTACTTGGTAATCTAAACATTCACCTACGCACTCATACGGGTGAGCGACCCTTCAACTGTTCCCAGTGCTCGAGAACCTTTGCCCATGGAAAAGGCACCAACACCTGCTGGCCAAATATATTCACCTACTCAGACGCCGGACAAGACAACTTGTTGCTTATAATCGAGGAGGCGACTGGACACGAGGTTATACAAAATGAGAATCTACCTGAATACATTTGCCCTTCCTGCTTGGCAGCGGCTAAAACAGCCTTCAATTTTAAGCGGCGTTTAGAGAAGAGTCTTCAGCTGCTGGAGCAGAACAGAACAAGATACAAGGATTCATTGCAGTATGATTTGATCTCTGGCACTGAAGACGCCAGCAAAGAGTGCAAAAAGAAAGAGGAGTTACTACAACCTTTCGAATGTTACCACTGCTCGAAAACCTTTACCCACAAGAGCATGTTAAAGAGACACCTTCGTATGCATACTGGGGAGCGACCCTTCGCATGCTCACACTGCTCGAAAACCTTTGGCGTAAAAAGCACTCTAAAGATCCACCTGCTCACTCATACTGGCGAGCAACTGTTTGAATGCTCCCATTGTTTGCAAACCTTTGCCCATGGAAGCAGTCTCAAGTGTCACCTACGCACTCATTCGGGCGAGCGACCTTACGAATGTTCCCACTGCTCGAAAAGCTTTGTCCACAGTAGTAGTCTACAGCGGCAtctacacactcacacaggcGAGCGACCTTTCCAGTGTACCCAGTGTCCGAAATCATTTAGCATACTTCACTATCTAAATAGTCACCTGCGCACTCATACGGGTGAGCGACCCTTCAACTGTTCCCAGTGCTCGAAGACCTTTACCCATGGAAACAGTCTCGAGTGTCACCTACGCACTCATACTGGCGAGCAACCTTTCAAATGTTCCCACTGCTCGAAAGCCTTTATCCAAAGCAGCAGTCTGAGGAGTCACCTTCGCACTCATACGGGCGAGCAACCCTTCAAATGTTCCCAGTGCCAGAGGACCTTTACCCATAGAAGCAGTATAAAGGCTCACCTTCGTTCACATGATAAGGATTTGAAAACTTGA
Protein Sequence
MTYRARGAQEQCRVCMACWAEGTNYNNWRNIFTDSDAGQDNLLLIIQEVTGHEVKQDGKLPESICPSCLAAAKTAFNFKRRLEKSLQLLEQNGWRHEELLQVTPEETVNSIREQNDLESLTAAKHSEDKQRPHKCAHCPHKFAHKCLLKRHLRIHANNRERAFQCTHCPKTFTEINYLNQHLRTHTGERPFKCTQCPKTFSLLANLSSHLRIHTGERPFKCTHCSETFAQSGNLKRHTRTHTGERPFECPHCSETFGGKGNLQRHIRTHTGEKPFKCSHCSKSFAEECNLNQHRRTHTGERPFKCTLCSKTFVQSSCLNRHLVTHTGERPFQCTQCPKSFRVLGNLNIHLRTHTGERPFNCSQCSRTFAHGKGTNTCWPNIFTYSDAGQDNLLLIIEEATGHEVIQNENLPEYICPSCLAAAKTAFNFKRRLEKSLQLLEQNRTRYKDSLQYDLISGTEDASKECKKKEELLQPFECYHCSKTFTHKSMLKRHLRMHTGERPFACSHCSKTFGVKSTLKIHLLTHTGEQLFECSHCLQTFAHGSSLKCHLRTHSGERPYECSHCSKSFVHSSSLQRHLHTHTGERPFQCTQCPKSFSILHYLNSHLRTHTGERPFNCSQCSKTFTHGNSLECHLRTHTGEQPFKCSHCSKAFIQSSSLRSHLRTHTGEQPFKCSQCQRTFTHRSSIKAHLRSHDKDLKT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-