Lfen000186.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lordiphosa fenestrarum
Gene Symbol
-
Assembly
GCA_035044985.1
Location
JAWNNO010000030.1:129410-137438[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 4.3e-07 2.7e-05 24.7 0.9 1 23 103 125 103 125 0.98
2 21 1.1e-05 0.00069 20.3 6.1 1 23 131 153 131 153 0.99
3 21 0.0004 0.026 15.4 1.3 1 23 159 181 159 181 0.98
4 21 8.8e-05 0.0056 17.4 0.8 1 22 187 208 187 208 0.95
5 21 0.0014 0.091 13.6 6.8 1 23 215 237 215 237 0.98
6 21 0.0042 0.27 12.1 2.9 1 23 243 265 243 265 0.93
7 21 8.2e-06 0.00053 20.7 1.1 1 23 271 294 271 294 0.97
8 21 2.2e-05 0.0014 19.3 2.5 1 23 449 471 449 471 0.99
9 21 9.9e-08 6.3e-06 26.7 2.2 1 23 477 499 477 499 0.99
10 21 4.7e-05 0.003 18.3 7.2 1 23 505 527 505 527 0.98
11 21 1.1e-05 0.0007 20.3 2.5 1 23 533 555 533 555 0.98
12 21 0.003 0.19 12.6 8.9 1 23 561 583 561 583 0.99
13 21 3.1e-06 0.0002 22.0 1.0 1 23 589 611 589 611 0.98
14 21 1.8e-06 0.00012 22.7 1.1 1 23 617 639 617 639 0.99
15 21 2.4e-05 0.0015 19.2 4.3 1 23 645 667 645 667 0.98
16 21 4e-07 2.6e-05 24.8 2.7 1 23 673 695 673 695 0.99
17 21 3.4e-06 0.00022 21.8 7.0 1 23 701 723 701 723 0.99
18 21 2.1e-07 1.3e-05 25.7 1.1 1 23 729 751 729 751 0.99
19 21 7.1e-05 0.0046 17.7 3.0 1 23 757 779 757 779 0.98
20 21 0.00016 0.01 16.6 8.9 1 23 785 807 785 807 0.98
21 21 1.3e-05 0.00084 20.0 1.8 1 23 813 835 813 835 0.99

Sequence Information

Coding Sequence
ATGGCCTGCAGTGCAATAGGACCACCAGAGCAATGCCGCATTTGCATGTCCTGTTTGTCAGATGGCACCAACAGCAAATGGCGAAATATATTCACCGACTCGGAAGCTAAACAAGATGACTTATTGCTTATAATCGAGGAGGTGACTGGACACGAGCTTAAACAGGATGAGAATCTACCAGGCAGCATCTGCACTTCCTGCTTGGCAGCGGCAAAAACCGCGTTTAATTTTAAGCGTCGATTTGAGAAGAGCCTAAAGCAGCTGAAAGAGCTCAAAGCCTACACTCCAGAAGAGCAGGAACAACCTTTTCAGTGTCCCCAATGCTCAAAGACTTTTAGCAGAAGAGCGACTCTAAAGATTCACTTGGCCACCCATAGCGAAGAACGACCATTTCAATGCTCCCACTGCACCAGAAGCTTTGTCCAGAAGGGCTGTCTGACGAGACACCTACGCATTCATACTGGCGAACGACCCTTTGAATGTACCCAGTGCTCGAAGTGGTTTCGTGAAAAATCCCAACTGAAACAACACCTACTCATTCATGCCGGTGATCGTCCCTACGAATGTTCCGACTGCTCGAAAACCTTTgttgaaaaaaacaaactacaGAATCATCAAAGCACAAATGCGGGAAAGCAACCCTTTAACTGTCACCAGTGCTCCAAATCCTTTAGCCTAAGATGCGGCCTAAAGAATCATCTTAACACTCATACTGCCCAAAGTGTCTTCGATTGCATCCACTGCACAAAATCATTTCTCAATAATGACGGTCTGAGGAAACACTTGCGCACGCATTCGGGCGAGCGTCCCTTCGAATGTACCCAGTGCTCGAAAAGCTTTAGCGAAAAATCCGAACTGGAGAATCATAATCGCAGCATTCATTCGGGCGAGCGATCATTGGTTAATCACGGAGATTGCTTTGTGGAATGGCAGCAAAGGGATCACAATGCCGTGTTTGCAGGTCCTGTCCAGGCAATAACACCAACTGGCCAAATATATTCACAGACACGGAAGCTGAACAAGAAGACTTATTACGTAATAATCGAGGAGGTGACTGGACAAAAGGTGAAACAGGATGAGAACCTACCCGACAGCATTTGTCCTTCATGCTTGGCAGCGGCAAAAACAGCATTCAATTTTAAGCAGCGTCTGGAGAAGAGTCTTCAGCTGTTAAAGCCGAATAGTGCAATGAACGAGGAAGTCCATAGAAAGGAGAACTTCAACAGTGTCAGCGAAGAGAGTGAATCGTATGATACAGAATCTCTCGCAAGAGACGGTAGCGAAGACGACAGCCAAGAGGATGAAGGGAAAGAGAAGCAAAGCACTCCAAACGAAGAAAGACCATTTAAATGCGACCACTGCTTGAAAACTTTTGCCGCCAAGGGGTCTCTTAAGAGGCATCTACTCACACATTCCGAAGAGCGTGAATTCCAATGTTCCCACTGCCCCAGATCCTTTGCCCAATTGGGCAATCTAAACAAACACCTACGCACTCATACGGGCGAGCGACCCTTCGAATGTAACCATTGCTCGAAAACCTTTGTCGAAAAAGGTCATCTAAACAGACACCTTCACACCCATGCGGGCGTGGAACCCTTCAGTTGTTCCAAGTGCTCGAAAAGCTTTGCTGAAAAGAAACAACTAAAGGACCACCTACGCAGTCATTCGAGAAAGCAACCCTTTAAATGCCTACACTGCTCGAAAACTTATACCCAAAAATGTAGTCTAAAGTATCACCTTAGCACACATAAAGCCGAACGACCCTTTGAGTGCTCCCAATGCTCGAAAACCTTTATCAACAATGATGTGCTTAAGAGACACCTTCGCATTCATACGGGCGAGCGGCCCTACGAGTGTTCCCAGTGCTCCAGAACCTTTGCCCAAAGAGGTACACTAAAGATTCATCTGCGCACTCATACTGGCGAGCAACCCTTTCAATGTTCCCAATGCTCCAAAACGTTTACCCATAGAGGCAGTCTCAAGTCGCACCTACTTAACCATGCAGGCGGACAACCCTTCAAATGTCCGCATTGCTCGAAAACCTTTACAGAAATGGGCAATCTAAATCAACATATACGCACTCACACTGGAGAACGACCCTTCAAATGTACCCACTGCTCGAAAAGCTTTGTCCAAAGTGGTTGTCTACAGCGTCATCTACGCACTCACACCGGCGAGCGACCCTTCAAATGTACCCAGTGCCCGAAATCGTTCACCGTGCTGGGCAATCTTAACAATCACCTACGCACTCATACGGGCGAGCGACCCTTCAACTGTTCCCAGTGCTCGAGAACCTTTGCCCATGGAAGCAGTCTAAAGGATCACCTTCGCACTCATTCTGGGGAGCAACCATTTGAATGTTTCCACTGTTCGAagactttttcacaaaaatgcaGTCTCAGATATCATCTTAGAACACATAATGCCAAAGAACCCTTTAAGTGTTCCCAATGCTTCAAAATATTTGACCGTAGAAGTGGTCTCAATGAACACCTTCGCTCTCATTTTGAAGAAGAATCAAAAATTGAAGTGATCGCTGTGCGTGAAGACCTTCAAAGTGAGGCTCACTTAAAGGCTTAA
Protein Sequence
MACSAIGPPEQCRICMSCLSDGTNSKWRNIFTDSEAKQDDLLLIIEEVTGHELKQDENLPGSICTSCLAAAKTAFNFKRRFEKSLKQLKELKAYTPEEQEQPFQCPQCSKTFSRRATLKIHLATHSEERPFQCSHCTRSFVQKGCLTRHLRIHTGERPFECTQCSKWFREKSQLKQHLLIHAGDRPYECSDCSKTFVEKNKLQNHQSTNAGKQPFNCHQCSKSFSLRCGLKNHLNTHTAQSVFDCIHCTKSFLNNDGLRKHLRTHSGERPFECTQCSKSFSEKSELENHNRSIHSGERSLVNHGDCFVEWQQRDHNAVFAGPVQAITPTGQIYSQTRKLNKKTYYVIIEEVTGQKVKQDENLPDSICPSCLAAAKTAFNFKQRLEKSLQLLKPNSAMNEEVHRKENFNSVSEESESYDTESLARDGSEDDSQEDEGKEKQSTPNEERPFKCDHCLKTFAAKGSLKRHLLTHSEEREFQCSHCPRSFAQLGNLNKHLRTHTGERPFECNHCSKTFVEKGHLNRHLHTHAGVEPFSCSKCSKSFAEKKQLKDHLRSHSRKQPFKCLHCSKTYTQKCSLKYHLSTHKAERPFECSQCSKTFINNDVLKRHLRIHTGERPYECSQCSRTFAQRGTLKIHLRTHTGEQPFQCSQCSKTFTHRGSLKSHLLNHAGGQPFKCPHCSKTFTEMGNLNQHIRTHTGERPFKCTHCSKSFVQSGCLQRHLRTHTGERPFKCTQCPKSFTVLGNLNNHLRTHTGERPFNCSQCSRTFAHGSSLKDHLRTHSGEQPFECFHCSKTFSQKCSLRYHLRTHNAKEPFKCSQCFKIFDRRSGLNEHLRSHFEEESKIEVIAVREDLQSEAHLKA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-