Lfen002964.1
Basic Information
- Insect
- Lordiphosa fenestrarum
- Gene Symbol
- fru
- Assembly
- GCA_035044985.1
- Location
- JAWNNO010000783.1:71174-73150[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.3e-12 1.2e-08 34.8 0.1 1 44 379 422 379 423 0.91 2 2 10 2.3e+04 -5.1 1.3 4 15 521 532 521 534 0.72
Sequence Information
- Coding Sequence
- ATGGGTGGTGGGCCCACGCCCGTGGCCAGCACGGAGGGTCAGACGTATTGCCTGCGCTGGAACAACCATCAGACGAATCTGGTGCAGATACTGCATGCGCTGCACGAGGTGGGCAGCTATGTGGACTGCACGCTGGTGGTGGACGATGAACAGTTCAAGGCGCATCGCGTGGTGCTGGCCGCCAATTCGCCATATTTCCAGCACATACTGCAGGATGTGCAGCAGGACCAGTGCAGCATCATACTGCCGGGCGTGAAGGGGTTCGAGATAGCGGCCCTGCTGCAGTACATGTACACGGGGGAGACGACGGTGACGAAGAGCCAGGAGCCGGAGATATTGCGCACCGCCAAGGAGCTGCAGGTCAAGGGTCTGTATGACAATCTGATGAAGTTCAACCACAAGCCGACGAGTGCGACGGACGAGTATGCGGCGAGCAGTCTGGCTCCCACCTCCAGTTCGGTGACGCACAAGCCACAGAATGGCAACTCGTCCTCAGTGATCTCCACCTCGACGCACATTTCACCCAGTGCGGCCATATCGAGCAGCTGCTCGCCACCTCCCAGCAATTTTGCAGCCTACCAGCCGCCCTACACGAACTATGCCACCGGTCCGGCGGCCCTTAGTGCTCCACATCCACACATACCCGCGGCTGAAGCACCCCTAACGCCCACACATGCACCCTCACATGCAGCCCCGGGTGAGGCGGGTGGCCAGTGGCCACTCTCACCCTCAGCCGCTGCTGCAGCCATGCTCAACTCGGTGTATGAGTCTGCCGCCGACATGAATCCCCTCAAGCGCAAGAAACTGTCGGCCATTTCCAGCATGTTATTGAATAGCACACGGGATACGCCCATTTTGCGTAATGTGCTGGCCCAGGCCAATCCCGCCGACTCCAGCCAGACCAATCCTTTGCTGATGAAGAGCAGCTCCTCCTCGTCCTCGCTGGTGGAGGCCAAGACGCCCTcgcatcagcatcaactgcaGGGCGGCTCCGGCACCGGCAGTCACAGCTTCAATGGCTCCGACTATGGCGGCGACAAGGAGCCCTTGTCGCCACACACGGATCGTTCGTTTGACGAGGAAACGGGCGGACCCGGTGGCAAGAAGCCGGAATGGAAGCGTTACAAGCAATACACCAGGGCGGACATGATGTGCGCCATCCAGGCGGTGCGCGAGGGCATGAGTGCGCTGCAGGCCAGTCGTAAGTATGGACTGCCCAGCCGGACGCTGTACGACAAGGTGCGCAAGCTGAATATCACCACAGGCCGTGGTACACATCGCACGCCCAAGCGTAGTCCACCTGGAGTGGAGTCCTCTGCTGCCTTTCCCtatgcggcggcggcggcacaCAACTATGCACATGGCCAGGCACAGACTGAGCTGATGGAGCGGGGTGTTGgcggaggtggtggtggtgagGGCAAAGAGCATGCACCGCACCATGGCATGCCACCCACCATACCACACTCGGCGGCAGCGCTGCTGGATCATGCCTTCCTCCAGCAGGCCTTGGAGAATCGTGGCGGGGATATGGCAGGACGCGAGGCTCTGCATGCCATGGCCTTGGCAGCGGCGGCACATGCAGCTGCCAATCGTATGTCCAGCAGTCCCACCGAAACGGGCTCCAATGgccaccatcatcatcagcagcagcatcatcatcatcagccacACCAACTGTCGCCCAGTCCCCGGCACTATGCCGATGAGCGTTTGATCAAACGTGAACGGGATCAGGATGAGCGCGAGGATGCCGACGATGAGGAGGATCACGATCATGTGGAGGATCTATCGCTGGCCAGAAAAGAGCGACCCGAGTCACCCTActcaccgccaccgccacgcGCCTCTTCGCCCCTGGAGAGTGCCAGCGTCATAATGCACTCCTCCACCAACTCGACCAACGGCAAGGACCTGGACGACTATCCCGCTTCGCCCACGGGCGGCCTCAAGCGTGAGCAAACCCACACCGACTGA
- Protein Sequence
- MGGGPTPVASTEGQTYCLRWNNHQTNLVQILHALHEVGSYVDCTLVVDDEQFKAHRVVLAANSPYFQHILQDVQQDQCSIILPGVKGFEIAALLQYMYTGETTVTKSQEPEILRTAKELQVKGLYDNLMKFNHKPTSATDEYAASSLAPTSSSVTHKPQNGNSSSVISTSTHISPSAAISSSCSPPPSNFAAYQPPYTNYATGPAALSAPHPHIPAAEAPLTPTHAPSHAAPGEAGGQWPLSPSAAAAAMLNSVYESAADMNPLKRKKLSAISSMLLNSTRDTPILRNVLAQANPADSSQTNPLLMKSSSSSSSLVEAKTPSHQHQLQGGSGTGSHSFNGSDYGGDKEPLSPHTDRSFDEETGGPGGKKPEWKRYKQYTRADMMCAIQAVREGMSALQASRKYGLPSRTLYDKVRKLNITTGRGTHRTPKRSPPGVESSAAFPYAAAAAHNYAHGQAQTELMERGVGGGGGGEGKEHAPHHGMPPTIPHSAAALLDHAFLQQALENRGGDMAGREALHAMALAAAAHAAANRMSSSPTETGSNGHHHHQQQHHHHQPHQLSPSPRHYADERLIKRERDQDEREDADDEEDHDHVEDLSLARKERPESPYSPPPPRASSPLESASVIMHSSTNSTNGKDLDDYPASPTGGLKREQTHTD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00916318;
- 90% Identity
- iTF_00916318;
- 80% Identity
- iTF_00917300;