Lfen000120.1
Basic Information
- Insect
- Lordiphosa fenestrarum
- Gene Symbol
- -
- Assembly
- GCA_035044985.1
- Location
- JAWNNO010000020.1:1701555-1703078[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 8.8e-18 2e-14 53.3 0.0 2 45 338 381 337 381 0.96 2 3 0.02 47 4.2 0.0 27 37 410 420 406 425 0.89 3 3 1.5e-19 3.4e-16 59.0 0.0 2 41 447 486 446 489 0.95
Sequence Information
- Coding Sequence
- ATGGGCCACTCGGCGACGATAATGGACATACAACGCTCTCTGCGCGACGACAACGATACCTGCGAGGTTGTATTGGCGGCCAAGGATGGCATCAGTGTTCGCGCCCATCTCTTTGTGCTGAGCACTTGCAGCGATCTGATGCGAAATCTCCTGGTGGATGTGCCGCCCGGGCAGGAGGCCACCATCATTTTGCCCGACATACGCGGCGAGCTGCTGGAGACGATGTTGTCGTTCATTTACATGGGCGAGACGAGTTTGCCCTCGGCCTCGTTAACCGAATTCCTGGAAGCCATTAATCTGTTGGGCATCAAGTCGGCCATTAGCTTCGAGTGTAATCCCACGGCCCAGATGAATACCTCGAATGTGGACCAAGTGGTGGCTGTGGAAGCGGCCAAGTCCATAAGTGGATTGCAGATTGCTTCAACTGAGCTGCTGGAGGACGAAGAAGAGGCAGCGGGTCAGACTCCGACAACGGAAACGGCGGTGATTACCAATCCTCAGCCGGAACAGTCGACACCGCCTGGCCGTGCCCTGGAGTTTCTGGACATGTACAATGAACAGCCGAAGATTACCTACTCCATTGAGCATATGGGCGGCAACACAAGCGGCAACCAGTATATACTCACCGAAAACACGGGCACTTTTACCATCACCCAATCGGCAGCGGCGCCCATGTCCAAGCTGGATGCCTCCCATGTGGATATGGCTGAGGATGACGACGCTGAAGCTGATGTCACCGATGAGGTGGAGGAGCAGGAGACGCAACTAATTGAGGAGGAATATGTGCCGGCTGACCCTTTGATCGATATGCAAACAGATGCTGAAATGGGTGATGGTGAACATGAAGACGACGCATCGGATGCCGAggaagaaatggaaatggacaTAAAGCCCAATCTGGTGCATGccgcaaaagcaaaagcccGTCGTTCGGCCCCGGCCAAGATCCAAAAGCGCCAATCGACCAAGCTGCATTATGTGGCGCTCAAGAGCGAGCACAAGGATGGCATCAACGACGCACTGGAATTGGCCGCCGAAGCTGTGCTCAACGAAGGCCTCAGCCTGCAAAAGGCTGCCGATCGTTACGATATATCCAAAACGGTTCTATGGCGTCGCGTGCGCACCAATCCGGAGTATTTGCGCAGCAATCGCGAGAAGCCCTCTCTGTCTGAGGCCTATGAGCGTCTGAAGAGTGGCGACTCGCTTAAGAGCATCAGCCAGGATCTGAATATACCCATGTCCACGCTGCACCGTCACAAGGTGCGCCTCGCGGCTCAGGGCCGTTTGCCCGATTTTGTAGCCTGCCGGCGCCGAGATAGCACACCCAAAGATGAGTTGCGCGACAAGCTGGCCAAGGCTGTGCATGCGTGCATCAACGAGGGCATGTCCCAAAATCATGCGGCCAATCTCTTCGAGATACCCAAGAGCACGCTGTGGCGACACCTGCAGCGTCGTGTGGCCGAAACGGAACGCAAAGTCAAATTGGAGCAGCACGATGTAGAGGAAGAGGATCTTCTTAACTAG
- Protein Sequence
- MGHSATIMDIQRSLRDDNDTCEVVLAAKDGISVRAHLFVLSTCSDLMRNLLVDVPPGQEATIILPDIRGELLETMLSFIYMGETSLPSASLTEFLEAINLLGIKSAISFECNPTAQMNTSNVDQVVAVEAAKSISGLQIASTELLEDEEEAAGQTPTTETAVITNPQPEQSTPPGRALEFLDMYNEQPKITYSIEHMGGNTSGNQYILTENTGTFTITQSAAAPMSKLDASHVDMAEDDDAEADVTDEVEEQETQLIEEEYVPADPLIDMQTDAEMGDGEHEDDASDAEEEMEMDIKPNLVHAAKAKARRSAPAKIQKRQSTKLHYVALKSEHKDGINDALELAAEAVLNEGLSLQKAADRYDISKTVLWRRVRTNPEYLRSNREKPSLSEAYERLKSGDSLKSISQDLNIPMSTLHRHKVRLAAQGRLPDFVACRRRDSTPKDELRDKLAKAVHACINEGMSQNHAANLFEIPKSTLWRHLQRRVAETERKVKLEQHDVEEEDLLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00917324;
- 90% Identity
- iTF_00915460;
- 80% Identity
- iTF_00917324;