Lcol000902.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lordiphosa collinella
Gene Symbol
-
Assembly
GCA_018904265.1
Location
JAEIFV010000346.1:175649-191221[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 8 0.021 1 10.2 0.6 1 23 991 1014 991 1014 0.96
2 8 0.014 0.67 10.8 0.2 1 23 1019 1042 1019 1042 0.98
3 8 0.24 12 6.8 2.3 1 23 1235 1258 1235 1258 0.93
4 8 0.00065 0.032 14.9 2.1 1 23 1266 1288 1266 1288 0.98
5 8 0.00012 0.006 17.2 0.2 1 23 1295 1318 1295 1318 0.97
6 8 2.5e-05 0.0012 19.4 1.4 1 23 1324 1346 1324 1346 0.97
7 8 3.2e-06 0.00016 22.2 1.0 1 23 1351 1373 1351 1373 0.99
8 8 0.11 5.2 8.0 6.8 1 23 1379 1401 1379 1401 0.99

Sequence Information

Coding Sequence
ATGGGCAGCACCGGTCGCAACGGTGATATGCAGCTCATCACAGGTACAGAGTATGTTATAATCAGCCGCGAAGATGGACTACCCCAAGAGATTTGCCGTCAATGCAAAGCCCAATTCCTAATGGTGGCCAAATTTAGACGAAAATGTGTTCGTATGCAGCAACGTCTGCAGGATTATGCTCAAGAGATTGCCGACCGGCAGTCCAAAATACTGGCCAAGCGACAGCAACAACTACAGCAGCAGCAGCAAAATGATGCCTACAGTCATCTACCCGAATCACAGCTGGAACGTAAACGTCGCTTGAAACCCGTGACTGAGGTGGAATCACATGAAGAGCCAAAGCAAGTTAAGACTGAAATTGAAGAGCTTCCGCCACCCAAGATACGACGACTACAGCTGCGATTACACAAATTGCGCGCCAGCCTCACCGAATGCTTGGAACAGCCAGCTGAAGGTGAAAAGATAAACCTACCCTGGAAAACCAAAGCGGCTAGGAAACAAATAACAGAGAATTATGGGGAAATGGAAGTGGAGTCCAAAAGAAGTACAAGTAGCAGTGATTTATCTGTGGGACCATGTTGTGGTTTCGAAAGCGGTGATAGCAATCCCTCAACTTCATCCACTTCAGAGCTGAAATATCCCAAGACGACACCGCGTCGTGGACGACGACGTTCACGGAATGCGCCTGTATACACAACAGCCAAACGGCAGAGACGTACGCTAATAAAGAAAATGCCTTCAGATGCACTTGAAATGATGGAGAATGCCAAGTCTGAGAATTTAGTTAGAATTATGAAGGATGAAAGCTCTTCTTCCACCAACAGCAGCAGTACAACGACGGAGATTTCTTTTAGAAAGCCACAAAATGTTACACCTTCCCTGGAAAACTTTAAAGAAATTCCTTTAAGTAATTTGGATGAGCTTTCCGAACAGCTTCATCCCCAGAACCCTGACCAAATTACACTCAGTACAACGGAAAAGCTGCCGGAGAGTATTGTTGAAAACATGCCAAGAATATCACAAAATGAAAACTCAAATGATCAGCCAGAAACCTGTTCCAGCAAATCGAAAGAGTTGGATGAAAAAGAGCAAGAACTATCAAGCTCTTCCAATCTTAATTCTATAGAAAAACCCTGCAGCGAGGCAGAGGAGTTCGAGAAATCGAACTCTAAACAGAAAATTATCTCCAGCAATGTTGCTGAGTCCACGGAAAGCTCTTCCGTTCATCAAAAATGCTTACCGGAAACCTCTTCAGACGAGAACCCTGTTGAAGTTCCCTCAGAAACCAGTTCCTATGAAAATTCCCACACAGATAATGCGATAGAAAACTCATCTAAACAAATAGAACATGTGAAGAAGGTGCCTGAAACAAACTTTGATGAGCATCCCTCTGAAACTACCTCAAAGGAGAAACCAGACACTGTTTCCGAAACGGAAATACCTTTAAGTACGCAGTCGGAAATCTGTACCGTTAGCTCATCAACAGAACCTACCGAACCAACTGAGCTTATAGTAAGCATACCCCTTGAAGTACTTAGCGATGATCTACAGCGTCGACTCTGCGTGGAGGGAGACATGAATATGGAGCAGGAACAGGAGTCTACCAAGGAGGATGATGATGTAAATAACAATGCAAATGCTGAAAATTTTTGTCAGAGTGCTACAGCAGATAGCTTCAATGCTGCTGTGGCACTCCCAATACCCCTTGAAATTGAAGCAAAACAAGAAACGGAAATTCCACTCCTAGTAGCGGAAACTCCACCAAACATAGATGACAAAAAACAGCAGGAGCTGGATGAAGAAGAAGATGAAGAGAAAGAAGTGCCAATGGTAAGAACAGCTCCCACGCCCATGGACTTTTTAGCCGAATTTGAGAAACATTGCGAGCTTAGAACAAAATCGCCTTCTCCGCCTCCTCCTCCATCTCCACCACCACCAGCACTTAACGATTTGGAGGCCAAACAACAGCTGGAGGTCGAGATGAACGATGTGGAGAGCACATTGAATGGCATTTTAAATGAAATGCAAGATCAGCATATGTATACACCAACATGTTCGCATATAGATGAGTTCCTAACACCCGCTGATTATGCACCCCTCACCGAACAGGAGCCGCCCGTTCCCGAACAGACGCCAGCAGCCACCACCGGAGGAGATCTCTTTGATAGTAATAGCTTTACCAATGAACTCATAGGCTTTCAAAATGACATACCCTGCTTTGAGAATATTGAAGCCACTCCGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCAAGAGCCAAACATTACTAGCTATGATTCTATGCCAGCTTATACTTCGGTGGAACCTGCACAAACATGGCCCCCACCTCAACAACAACAACAACAACAGCACCTGCAAACGACTACCCAGCTCCAATGGTCAGCAGTAGGTGGTCTGGAGGCCATTAAAACCACACCCATTGAAAGCCCTCATCCAACCCCCACCACCACCACCACCTATTACATACAAGCCAGTGATCTGTATGCTCCAGCACAACCAACTGTTAATCCTTCCCTGGAAACCACCTATGCCATGCTACCACACGGCAGCCAATTGGATACCAATGAGAATTATGTGCTGGAACAGGCTAATCCACAACCAACAACCGCACAGCAACCCATCATGATACTTATACAACAGCCGGAACTGCAACAGCCTGTGGCCTCCGCCAGTAATCCCCAGCAGGCACCCCTACACATCTATGGTGCACCCATCAGCAATGAGTTGCATCGTCATACAGTATTACCCAGTCACAGTCCCATGCCCGCCACCACACCCAAGGGTCGGGCACTTTCACTCAAGTGTCGCTTCTGTCAGAACGGACCACGTTTCTCCAATAGTCTCGAGTATAGTCGTCATATCATCGAATTGCATCCAGCGGTGGCCCCATTCAATTGTCCCCATTGTCCCTTGGCCTTTGCCGGTCGCAGTAAACGCTCTCAGCATATACTTAGCAATCATGTGGTCCAGCAATATCAGTGCGGTCAATGTACACAGGTGTTTCCGGCACAGCGAGCCTTGGATTTACATATACAACGGTTTCATATGCCGGCCAACGGAATGGCAAATGGAGGAGGCGGAGTCGGTGTACGTGTGGAAGAGGTACAATTGCAGATTGCAAATGAGCCACAGCCACAGTTGATCGCACAGACAACGCCACATCAGCCAGCCCTGGAACTGCAAACAAATGCAAATGAGCCACGGAAGACGCGAATACTGTGTTGCCCAGACTGCGAGGATTGCCCCTCTGGACATCATCATGGTGCTGGATCCTTCGAAGAGTTAACCCATCTACAACCACCGCCTACGGTATTGACACCACCCTCTACCATAGTCTCAGTGCCCTCACCACAGCCTCCCATGTGCAGTACACCACACATTACCCTGCCCTCACCCGAACAATCGGAGCCAGATTCCACGACGACTTTGCGTCAGTTCCGCAAACGCAATTGTATGGCTACTCCTGTTGCTTCACCCTCGCCATCCTCGTCGCCTTCGTCTTCCACCATGGCCGAGCCCCAAACAACCCACCCAAATACCACACCAACGCCGCCCACCAGCAGCAGCAGCAGTAGCATCGGCGCCACCTCTGCTCTGCAAGTAAGCGAACTACGTGGCAGCCATCAGTGCATCTACTGCGAGGAGCGTTTCACCAATGACATTGCCCTGCGCAAGCATCATCAGCTGGCCCATGGTGCCCAGACCACCATGCCTTTTGTGTGCACCATATGCAAGCGTGGCTATCGCATGCGTACGGCCCTGCATCGACATATGGAATCTCACGATGCCGAGGGACGACCCTACGAATGCAATGTGTGTCGAGTGCGTTTTCCGCGACCCTCACAGCTGACGCTGCACAAGATCACCGTACATCTGCTGTCCAAGCCGCACACCTGTGATGAGTGCGGCAAACAATTTGGTACGGAGAGCGCCTTGAAGACGCACATTAAGTTTCATGGTGAGCTGGGTTACCAATGCGATGAATGCGATGAGTCATTCGTTTATATCAAAGATTTGCGCAAGCATCGACGCACCCACAATGGTCAACTGTTTTACAAATGCGAACACTGTCCGCGCTCGTTCTTGCATTTTACGGGTTTTCATGCTCACATGAATTCTCATCTACCCTTGGGTGTATTCCTGAACGAAGACTCCGCTTTGATGACGACTACCAAATCTGAGCATGTGGAGGAGATAACCACCATCACAAAGCAACAACCAGATGAATCGCCCAGTTCGGTGGAAAGTAGCAGTGCTAACACAAATCTTCCTTTAGAAACAATTGCCACAACGCCATAA
Protein Sequence
MGSTGRNGDMQLITGTEYVIISREDGLPQEICRQCKAQFLMVAKFRRKCVRMQQRLQDYAQEIADRQSKILAKRQQQLQQQQQNDAYSHLPESQLERKRRLKPVTEVESHEEPKQVKTEIEELPPPKIRRLQLRLHKLRASLTECLEQPAEGEKINLPWKTKAARKQITENYGEMEVESKRSTSSSDLSVGPCCGFESGDSNPSTSSTSELKYPKTTPRRGRRRSRNAPVYTTAKRQRRTLIKKMPSDALEMMENAKSENLVRIMKDESSSSTNSSSTTTEISFRKPQNVTPSLENFKEIPLSNLDELSEQLHPQNPDQITLSTTEKLPESIVENMPRISQNENSNDQPETCSSKSKELDEKEQELSSSSNLNSIEKPCSEAEEFEKSNSKQKIISSNVAESTESSSVHQKCLPETSSDENPVEVPSETSSYENSHTDNAIENSSKQIEHVKKVPETNFDEHPSETTSKEKPDTVSETEIPLSTQSEICTVSSSTEPTEPTELIVSIPLEVLSDDLQRRLCVEGDMNMEQEQESTKEDDDVNNNANAENFCQSATADSFNAAVALPIPLEIEAKQETEIPLLVAETPPNIDDKKQQELDEEEDEEKEVPMVRTAPTPMDFLAEFEKHCELRTKSPSPPPPPSPPPPALNDLEAKQQLEVEMNDVESTLNGILNEMQDQHMYTPTCSHIDEFLTPADYAPLTEQEPPVPEQTPAATTGGDLFDSNSFTNELIGFQNDIPCFENIEATPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQEPNITSYDSMPAYTSVEPAQTWPPPQQQQQQQHLQTTTQLQWSAVGGLEAIKTTPIESPHPTPTTTTTYYIQASDLYAPAQPTVNPSLETTYAMLPHGSQLDTNENYVLEQANPQPTTAQQPIMILIQQPELQQPVASASNPQQAPLHIYGAPISNELHRHTVLPSHSPMPATTPKGRALSLKCRFCQNGPRFSNSLEYSRHIIELHPAVAPFNCPHCPLAFAGRSKRSQHILSNHVVQQYQCGQCTQVFPAQRALDLHIQRFHMPANGMANGGGGVGVRVEEVQLQIANEPQPQLIAQTTPHQPALELQTNANEPRKTRILCCPDCEDCPSGHHHGAGSFEELTHLQPPPTVLTPPSTIVSVPSPQPPMCSTPHITLPSPEQSEPDSTTTLRQFRKRNCMATPVASPSPSSSPSSSTMAEPQTTHPNTTPTPPTSSSSSSIGATSALQVSELRGSHQCIYCEERFTNDIALRKHHQLAHGAQTTMPFVCTICKRGYRMRTALHRHMESHDAEGRPYECNVCRVRFPRPSQLTLHKITVHLLSKPHTCDECGKQFGTESALKTHIKFHGELGYQCDECDESFVYIKDLRKHRRTHNGQLFYKCEHCPRSFLHFTGFHAHMNSHLPLGVFLNEDSALMTTTKSEHVEEITTITKQQPDESPSSVESSSANTNLPLETIATTP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-