Basic Information

Insect: Lordiphosa collinella
Gene Symbol: -
Assembly: GCA_018904265.1
Location: JAEIFV010000522.1:42538-44947[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.012 0.59 10.9 3.6 1 23 242 264 242 264 0.97

2 11 2.7e-06 0.00013 22.4 0.2 1 23 270 292 270 292 0.99

3 11 5.6e-05 0.0027 18.3 3.2 1 23 298 321 298 321 0.97

4 11 0.58 28 5.6 3.8 1 20 327 346 327 349 0.95

5 11 0.12 6 7.8 1.9 1 23 355 377 355 377 0.93

6 11 0.00018 0.0088 16.7 0.4 1 23 383 405 383 405 0.98

7 11 0.0015 0.072 13.8 0.9 1 23 413 436 413 436 0.94

8 11 0.013 0.66 10.8 2.2 1 23 442 464 442 464 0.97

9 11 0.0057 0.28 12.0 0.6 1 23 470 492 470 492 0.97

10 11 3.5e-05 0.0017 18.9 4.1 1 23 498 521 498 521 0.98

11 11 1.9e-06 9.4e-05 22.9 1.9 1 23 535 557 535 557 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.012	0.59	10.9	3.6	1	23	242	264	242	264	0.97
2	11	2.7e-06	0.00013	22.4	0.2	1	23	270	292	270	292	0.99
3	11	5.6e-05	0.0027	18.3	3.2	1	23	298	321	298	321	0.97
4	11	0.58	28	5.6	3.8	1	20	327	346	327	349	0.95
5	11	0.12	6	7.8	1.9	1	23	355	377	355	377	0.93
6	11	0.00018	0.0088	16.7	0.4	1	23	383	405	383	405	0.98
7	11	0.0015	0.072	13.8	0.9	1	23	413	436	413	436	0.94
8	11	0.013	0.66	10.8	2.2	1	23	442	464	442	464	0.97
9	11	0.0057	0.28	12.0	0.6	1	23	470	492	470	492	0.97
10	11	3.5e-05	0.0017	18.9	4.1	1	23	498	521	498	521	0.98
11	11	1.9e-06	9.4e-05	22.9	1.9	1	23	535	557	535	557	0.97

Sequence Information

Coding Sequence: ATGCCAAGGCGTACTCGAGCTCAAGCTAACGCCGAGTCAGGGGATCTGCAGTCTTTCCTAAACAATTTTCACAAAGAGATTGAAGATGGCGATGATAAAGTGGTAAATAAGATAATAAAAGCCATGGAGGAGGAGGAGGAGGCTGCAGAGGAGCAGGAAGACATAGACGAGGATAAATACTTTATAGATGATGAGGGCAATTGTTATATCAAAACTACGCCCAAAATGCAGGAAGAGTTGAAGAAAAAGTTGCTGCTGAAGAAGGCGGCGGTCAAGGCTAAACCCGCCACTAGCAACAAAACCTCCTCTGCCAAAGCCATCAATCTGCATCCAGCACAGACCTCGCCCAAGCATTTGCGTAACAAAACTGCTGCAGCCGTCAGTGTACGTCCCGCTCTGGCGGCAGTCACCAAACCGAAACCCGATCCAAAACCAGCTGAAAAGCCGGCACCCCCTACTCCTCCTCCTCCTCCCGCTCCCGAAACCATTCAGCCAGTTGTTACCCCGGAAGAAGCAGAAGAGGAACATATTCTTGATGAATTAATCGATGATCCGGATAACACCCAAGTCGAAACGATTTCATTTGCGGATGAGTTTGAATTTGATGAACAACCCAATGAAGCTAACAAGCCGGAGCCGGACTTTGTGGTCACTGGCAAACAGTACAAACTAACGTCATGTCCCACCACTGAGGCTAAGGCTCTGGAGTCCAAAACACATAAATTCGCTTGCTCCCATTGCACGTACACATCCAACAAAAAGTATCTCATAACCCGCCATTTGCGCATCCATTACCATGATTTTGGATTCAAGTGTTCCATCTGCGATCGTGGCTTCAAGTCCAATGCTGGCCTAATAAACCATGTGAACACGCATATGGGCAACAAGCCACACAAATGCAAGTCCTGTGAGAAGGCCTTCACCACCAGTGGCGAACTGGTACGTCACACACGGTACAAGCACACCAAGGATAAGCCACACAAATGCACCGAATGCAGCTATGCTAGCGTGGAGCTGACCAAATTGCGTCGTCACATGACCTGCCATACGGGCGAGCGTCCGTTTCAGTGTCCACACTGCACTTATGCCTCGCAGGATATGTTCAAGTTGAAGCGTCACAGCGTCATCCATACCGGCGAGAAGAAATATCAGTGTGACATATGCAAGGCACTGTTCACCCAATCCAATTCCTTGAAAGCCCACAAACTCATCCACAGTGTGGTGGACAAGCCAGTGTTCCAGTGTAGCCTTTGTCCCACCACCTGCGGACGCAAGGCCGATTTGCGCACACATGTGGCCAATATGCACACCTCGGAAAAGCCGCATATCTGCAAACGCTGTGGCCAGCAGCTGCCGGATCGTTATCAGTATAAGCTGCATGTTAAAACTCATGAAGGCGAGAAATGCTATGCCTGCACCGTCTGCAGCTATGCATCCGTCTCGAGGCGCCATCTGGACTCGCATATGCTTATCCATTTTAATGAGAAGCCCTTCAAGTGTGACTACTGCTCCCAGACGTTCCGGCAGCGTCAGCTGTTGCGGCATCATGTCAATACCATACATGACAAGGACTATAAACCACCAGAGCCCCGCAACAAAGTACACAACTGTCCCAGCTGTCCGAGGGTTTTTGCCCACAAAGGCAATCTGATGCGACACATGGAAACCCATGACAATTCGGTAAATGCCGAAAAGGAGCGTTTGAAATTGAAACTTGGACGGAAAATGCGTGTCAAGCCAAACGGTACCATTGTCCATTTAGTCGGTGACAAAGAGGTGGAGGGTGGACCCATTGAAATAGATGACGATGTTGAAGATGATGATGATGCCAACTCTGAGAACTTTGCACTAAGTGAACTGCAGGAACAGCTAGAGCTCGAGGATGAGCTTGTCATTGAAGCTCCCAAGAAACCTTCCGCCCGCCACGTTATTATCAATAAACAGAAACCACCGAGCACTTCCTCATCCTCCCCTGTCATCATAAATCAACGTCTGAAAAAACCAGCTGCTGGCAAAGGTTTCCAAATTAAGGAAGAGCCTGAAACCACCGAGTTCACGGTCAAGCTACGGGGCGAAGATGGCCAGGTCATGGTTGTAGAATTGATCAATGACGATGAAGAGGTGGTGGTCAAGCGTGAACCCAAAGGAATGACTGTGGATGAAAATAACTGCTTCGGATTTGAGGATGACGTTGAGCCGGACTACGAAGAGTTTGACGATCAGGATGGTGCCGAAGTGGATGGCACTTCGCAAGAATTTTTACAACTCATGGACATGATCGAGCAAGATAATTAG
Protein Sequence: MPRRTRAQANAESGDLQSFLNNFHKEIEDGDDKVVNKIIKAMEEEEEAAEEQEDIDEDKYFIDDEGNCYIKTTPKMQEELKKKLLLKKAAVKAKPATSNKTSSAKAINLHPAQTSPKHLRNKTAAAVSVRPALAAVTKPKPDPKPAEKPAPPTPPPPPAPETIQPVVTPEEAEEEHILDELIDDPDNTQVETISFADEFEFDEQPNEANKPEPDFVVTGKQYKLTSCPTTEAKALESKTHKFACSHCTYTSNKKYLITRHLRIHYHDFGFKCSICDRGFKSNAGLINHVNTHMGNKPHKCKSCEKAFTTSGELVRHTRYKHTKDKPHKCTECSYASVELTKLRRHMTCHTGERPFQCPHCTYASQDMFKLKRHSVIHTGEKKYQCDICKALFTQSNSLKAHKLIHSVVDKPVFQCSLCPTTCGRKADLRTHVANMHTSEKPHICKRCGQQLPDRYQYKLHVKTHEGEKCYACTVCSYASVSRRHLDSHMLIHFNEKPFKCDYCSQTFRQRQLLRHHVNTIHDKDYKPPEPRNKVHNCPSCPRVFAHKGNLMRHMETHDNSVNAEKERLKLKLGRKMRVKPNGTIVHLVGDKEVEGGPIEIDDDVEDDDDANSENFALSELQEQLELEDELVIEAPKKPSARHVIINKQKPPSTSSSSPVIINQRLKKPAAGKGFQIKEEPETTEFTVKLRGEDGQVMVVELINDDEEVVVKREPKGMTVDENNCFGFEDDVEPDYEEFDDQDGAEVDGTSQEFLQLMDMIEQDN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00914718;
90% Identity: -
80% Identity: -