Basic Information

Insect: Lordiphosa collinella
Gene Symbol: -
Assembly: GCA_018904265.1
Location: JAEIFV010000934.1:54309-55340[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 8.3e-07 4.1e-05 24.0 6.1 1 23 116 138 116 138 0.98

2 8 0.00028 0.014 16.1 5.6 1 23 144 166 144 166 0.98

3 8 3.7e-05 0.0018 18.8 1.0 1 23 172 194 172 194 0.99

4 8 4e-06 0.00019 21.9 3.9 1 23 200 222 200 222 0.99

5 8 3.8e-05 0.0019 18.8 5.9 1 23 230 252 230 252 0.96

6 8 4.5e-06 0.00022 21.7 4.2 1 23 258 280 258 280 0.98

7 8 2.3e-07 1.1e-05 25.8 0.9 1 23 286 308 286 308 0.98

8 8 0.00049 0.024 15.3 8.3 1 23 314 336 314 336 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	8.3e-07	4.1e-05	24.0	6.1	1	23	116	138	116	138	0.98
2	8	0.00028	0.014	16.1	5.6	1	23	144	166	144	166	0.98
3	8	3.7e-05	0.0018	18.8	1.0	1	23	172	194	172	194	0.99
4	8	4e-06	0.00019	21.9	3.9	1	23	200	222	200	222	0.99
5	8	3.8e-05	0.0019	18.8	5.9	1	23	230	252	230	252	0.96
6	8	4.5e-06	0.00022	21.7	4.2	1	23	258	280	258	280	0.98
7	8	2.3e-07	1.1e-05	25.8	0.9	1	23	286	308	286	308	0.98
8	8	0.00049	0.024	15.3	8.3	1	23	314	336	314	336	0.98

Sequence Information

Coding Sequence: ATGAACCACATAATACGGAGACTAACTGTGGACGAGATATGCTGCGTTTGCTTGGCAAGTCCGGGTGCTGGCGTGGACACCAACTGGCTGAATATATACACCGACTCTGATGCAGGACAACACTTGACGATTATATTAGAGGAGACAACGGGCCGAGAGGTTAAACCCGCTGTGGATCTACCTGAACGCATATGTCCCCCATGCTTGGCAGCCGCAAGAATTGCTTTGAATTTCAAGCGGCGATTGGAGCAGAGTCTGAAGTGCTTAAACGTGAAGACGGAGCGAAACACCACCACTGAAGAAGAGACCCTCACAAACATTGGAAAAGCGAGCAGAGAGCGGCCCTTTGAGTGTTCCCTCTGCCCAAAGACCTATACCACTAAACACAACCTGGAGCGACACCATCGCACGCATACTGGCGAGCGACCCTTTGAATGTCCCCACTGCTCGAAGACCTTTGCCGTAAAGTGCAATATGGAAGAGCACCTGCACACGCATACTGGGGAACGCCCTTTTAAGTGTACCCAGTGCCCACAGTCTTATGGCCTTAGGAACTCTCTAAAGGCACACCTGCGTACTCATACTGGTGAGCGACCCTTCCAATGTTCGCAGTGCTCGAAGGCCTTTTACGCAAAAAGTCATCTAAATCAACACCTACGTACTCATACTCGCGAGAGACAGAGACACTTCGAGTGTTCCCACTGCTTGAAGACCTTTCGCAATAAGCGCAATCTGGAGCGACACAAATTTTCACATACTGACGAGCGACCTCACACATGCTCAGAGTGCTCAATGTCTTTTGTTCGTAGTGGCCATCTAAAGAGACACCTACTTACCCATACTGGCGAGAGACGCTTCGAATGTGCCCACTGCTCGAAGGCCTTCATCCAAAAAGACGCTCTGAAGGCGCATCTGCGCACACATACTGGCGAGCGGCCCTTCGAATGTTCCCATTGCTCGATGTCTTTTACCCAAAGATGCCATTTAAAGACACACCTTAGCATTCATACTGGTGAACTACCTGTTAAATGA
Protein Sequence: MNHIIRRLTVDEICCVCLASPGAGVDTNWLNIYTDSDAGQHLTIILEETTGREVKPAVDLPERICPPCLAAARIALNFKRRLEQSLKCLNVKTERNTTTEEETLTNIGKASRERPFECSLCPKTYTTKHNLERHHRTHTGERPFECPHCSKTFAVKCNMEEHLHTHTGERPFKCTQCPQSYGLRNSLKAHLRTHTGERPFQCSQCSKAFYAKSHLNQHLRTHTRERQRHFECSHCLKTFRNKRNLERHKFSHTDERPHTCSECSMSFVRSGHLKRHLLTHTGERRFECAHCSKAFIQKDALKAHLRTHTGERPFECSHCSMSFTQRCHLKTHLSIHTGELPVK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -