Lcol019689.1
Basic Information
- Insect
- Lordiphosa collinella
- Gene Symbol
- -
- Assembly
- GCA_018904265.1
- Location
- JAEIFV010000775.1:59670-60860[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.00027 0.013 16.1 4.8 2 23 142 165 141 165 0.97 2 9 3.1e-06 0.00015 22.2 4.5 1 23 171 193 171 193 0.98 3 9 0.00013 0.0065 17.1 8.1 1 23 199 221 199 221 0.99 4 9 2.7e-07 1.3e-05 25.6 1.4 1 23 227 249 227 249 0.98 5 9 3.7e-06 0.00018 22.0 2.2 1 23 255 278 255 278 0.95 6 9 5.9e-07 2.9e-05 24.5 0.8 1 23 284 306 284 306 0.99 7 9 2.1e-06 0.0001 22.7 4.2 3 23 314 334 312 334 0.98 8 9 0.00091 0.045 14.5 6.7 2 23 341 362 340 362 0.94 9 9 5.1e-06 0.00025 21.6 2.8 1 23 368 391 368 391 0.97
Sequence Information
- Coding Sequence
- ATGTCCCCCGGATCGAAGAGATCAAATATTGCCTATCAATGCCGTGTTTGTATGTCAAGTTTGGCTGATGGCAGCAACTCCGATTGGCGGAATGTCTTCACAGACACCGACTCCAACGCGGGACAAGGCTGTTTGCGGTTCATAATAGAGGAGGTGACTGGACGACTGATTGAATCTGATGAGTATCTACCTGAATGGATATGCCCTTCATGCTTGGCAGAGGCAAAAACGACATTTAATTTTAAGTTGCGGTTTGAGAAGAGTTTTCTGCTGATTCATCAACAAGAAAAAACCAGACGTTTATTGGAAGCACTGACCAAGGAGGATGGGAAACAACGGGTCGTGCGAAAGGATTCCTTAAATATCGAAGAGAGCTCTAAGCAACAGTTAGCTTCAGAAAAGGAAAGTAAAGAAAATATCTTGAAGTGTAAAATCTCCGACTGCGTGAAAACTTTTACCCATCAACGATGTCTTGAGGATCACCTACGCACTCACAAGGGCAAGCGATTCTATGCATGTACTCACTGCTCCAAGGCCTACAACCGAAGTGACCACCTGCGGGAGCATTTGCGCACTCATACCGGCGAACGACCCTTTAAGTGTCTTCATTGTTCCAGAAGTTTTAGCCATAAAAACTCCTTAAGATATCACCAACTCACTCATACAGGCCAGCGATCCTATGCATGTTCCCAGTGCTCGAAAACTTTTACCCAAAGTGGCAGCCTGACCGAGCACCAGCGCACTCATACGGGCGAACGACCTTTCCAGTGCACCCAGTGCTCGAAAACCTTTACCCAAAGTGGCAAGCTAAGGAGACATGAGAAGCTCGTACATTCGGGTGAGCGTTCCTACGAATGTACCTACTGTTCGAAAACCTTTGCCTATCCTAACAGTCTCAAGGAACACCTACGCATTCATGAAGGCGAACGACAATACGGATGTTCCCACTGTCCAAAATTCTTTACCCGAAGTGGACACCTGCAGGAGCACCTGCGTACTCATACTGGCGAACGACCCTTAAAGTGTACCCAGTGCTCGAAGACCTTTAGGCATAAAATCTCCTTAAAACATCACCTAGACTTTCACAATGGCCAGCAACCCTTCAAATGTGCTCACTGCCCGCAAACTTTTACTCTAAAGGGAAATCTAAATAAACACCTACGACTCAAGCATAATAGCTGGGCCAAATGA
- Protein Sequence
- MSPGSKRSNIAYQCRVCMSSLADGSNSDWRNVFTDTDSNAGQGCLRFIIEEVTGRLIESDEYLPEWICPSCLAEAKTTFNFKLRFEKSFLLIHQQEKTRRLLEALTKEDGKQRVVRKDSLNIEESSKQQLASEKESKENILKCKISDCVKTFTHQRCLEDHLRTHKGKRFYACTHCSKAYNRSDHLREHLRTHTGERPFKCLHCSRSFSHKNSLRYHQLTHTGQRSYACSQCSKTFTQSGSLTEHQRTHTGERPFQCTQCSKTFTQSGKLRRHEKLVHSGERSYECTYCSKTFAYPNSLKEHLRIHEGERQYGCSHCPKFFTRSGHLQEHLRTHTGERPLKCTQCSKTFRHKISLKHHLDFHNGQQPFKCAHCPQTFTLKGNLNKHLRLKHNSWAK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -