Lcol011042.1
Basic Information
- Insect
- Lordiphosa collinella
- Gene Symbol
- -
- Assembly
- GCA_018904265.1
- Location
- JAEIFV010000501.1:105501-108343[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 8.5 4.2e+02 2.0 0.9 2 23 132 154 131 154 0.92 2 13 0.029 1.4 9.7 6.6 1 23 161 184 161 184 0.97 3 13 3.7e-06 0.00018 22.0 3.4 2 23 191 213 190 213 0.96 4 13 0.017 0.83 10.5 9.1 2 23 423 444 423 444 0.97 5 13 1.9e-06 9.1e-05 22.9 2.8 1 23 450 473 450 473 0.96 6 13 0.00041 0.02 15.5 0.7 1 23 478 501 478 501 0.96 7 13 9.6e-05 0.0047 17.5 5.5 1 23 519 541 519 541 0.96 8 13 0.00075 0.037 14.7 1.2 1 23 546 568 546 568 0.98 9 13 5.1e-05 0.0025 18.4 1.7 1 23 574 596 574 596 0.95 10 13 0.0005 0.025 15.3 0.7 1 23 602 624 602 624 0.98 11 13 5.2e-07 2.6e-05 24.7 2.7 3 23 632 652 631 652 0.99 12 13 3.8e-08 1.9e-06 28.2 1.1 1 23 658 680 658 680 0.99 13 13 0.58 29 5.6 3.4 1 19 685 703 685 708 0.89
Sequence Information
- Coding Sequence
- ATGCTCACCATTAGCCACACGAGCAGTTTGTCCCTCACACTCAACCTCAACGATGCCGCCACCAGCCAGCGCCTGTGTCGCATCTGTCTGCGCCAGGTGGGCGAGGAGCAGCCGCTGCATTTCATTTACAATGAGGCTCCCGTGGAGCAGGGAGCAAACCTGTCGCAAATTCTGAACGAATGCCTCAGCTATATGTGTGAGCGGTCCAGCGACGACCAAAGGATGCCCCATAACATGTGCGAGGCGTGCCTGCAGGCGGCCTGCCACGCCTACCGCTTCAAGCGTGAGGCCGAGAAGTCTTATTGCTCGCTGATGTCGCTGCTGGGGCACAAAACCAACATTAAGTCGAGTGGCAGCGACGTGTGCACCCAGACAGAGCAGGTGGCTTTGCTGCCCTGCGAAATGTGTCACGACCAGTTCCTCAATAGCCTGGAGCTGCGCCTGCACCGAAATCGTGTGCACGGCAAGGGAGCCGAGGAGTTCAAGTGCAAGTTCTGCCCGCAGCATTTCCAGCAACTGCGTCAGCTGCGCAGTCATTTGGCGCGTTGCCATGACCAGGTGGAGCGTCTCCAGTGTCGCTACTGCCAGCGGCCCTTCAGCCGGCGTGATCATCTGCTGAGACATATGCGAAATATGCACAAATCAATGGAGCAAGAGCAGGTGGAGCAGGTGCAGGAAACGGCGGAGGAGGAAGGGGCGGAGGAAGAGCTGGTGGCATCCGCTGAGGTGTTGCTCAACGAGGAGGAAGAGGGCGAGCCCGGGGCTGAGGAGTGCAATACAAATCCAATTTCAAGCAATGAGGAGGACGACGAGAATACGGATGAGGCCAAACAGTCGCTGTGGCTGCACATTAAACCGGAGCCTTGTTTGGAAGTGGAGGAAGACCTAAAGTCGGAGAAGAAGCGCAGAAGAAAAGCAGAACCGGAGTCCAGTGAGACGGAGGCTTTGGTCAAGGATGAACCCCTGACGCAGCTGGAGACGGTGTTACAAATTAAGCAGGATCCAGATCATCCAGCTGACAGCGCCGAGGAAGATGAGGAGGATGCAGGAGACGCTTTACATAGCGATGAGGATGAAGAACCCTTTGAATTTGTTGAAGAGGAAAGCGCTCTGGAGGATGACTCCGATGAGGAGGACTCCGATGAGGAAGGCGATGCTGAGGGCGATATTAAACCCAAGGTGGAAATAGTTCGCGAGTATTTGCAAAATTCTAAACCCAAGCGTCGCCGACGCCGCAACAAGCAAAGCGAACCCAATCCCGAGAATCGTTGTGATGTCTGCCAGCGCACCTTCTCCCGCCATTGCCATCTGCTGCGCCACAAGTTGTCACATTTGGAAAAGAAACCGCACAGCTGTCCGCACTGTCCCAAGGCGTTTGCCCGCAGCGATCATCTCAAGGCGCATGTACAGAGTCTGCATAGCAACAAGGAGCACAAGTGTGAGCTCTGTCAGGCTGCCTTCGCCCGCTCGGAGGCTCTCGAACGGCACAAGCTGAGCAAACACAATGGCGAGGGCCTGCAGGCGGGCAGCGAACTAAAACTCCAACTGGCCGAGCACACGTGCGAGTACTGCTCCAAGCGTTTCTCTAGCAAAACTTACCTGCGCAAGCACACGCTGCTCCACACGGACTTTCTGTATGCGTGCAAAAGCTGCGAGGAGACCTTCAAGGAGCGTCAGCAGCTGCGAGAGCACGAGAAAACCCACACGGGCCAGAGGAACTTTTTGTGCTGCATCTGTGGCGATAGTTTTGCACGCAATGATTACCTGCGGGTTCACATGCGTCGTCATAATGGCGAGAAGCCGTACAAGTGTCGCTACTGCATCAAGGCCTTTCCCCGGGCCACGGATCTCAAGGTGCACGAGCGCTATCACACCGGCACCAAGCCTAATCTGTGCAATACCTGCGGCAAGAGCTTTCATCGTGCCTACAATCTCACCATACACATGCGCACCCACACGGGTGAGCGGCCCTACAAGTGCGATCAGTGTCCCAAGAGCTTCACCCAGAGCAATGATCTCAAGGCACACATACGTCGGCACACCGGGGAGCGTTACAAGTGTCCACACTGTGATGCTTACTTCCTGCAGCTGTACAACATGCGGAATCATTGCCTGAGCGCGCATAACAAGCATATTGAGACCAAGACCGGACGCCTACAACGCACTGGTCTTTTAGATGAAAGCAATCAATCGCATTTGACCACTGTGGTCATGCCACCTGGCCGGTATCAGGACAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGGATGGAGCCGCATTTGCACCCACAGCCCCATTTGGGGCCTTTAATTTTCCACCTGTGGTCATGGCCCATCTCATGTACAATCATGGCGCAGGCAGCGGCGGAACTGGTGGCAGCAGCCAGCATAGTCAACAAAGCAATGCCAGCGGCAGTGAGGCCGGAAAGTAG
- Protein Sequence
- MLTISHTSSLSLTLNLNDAATSQRLCRICLRQVGEEQPLHFIYNEAPVEQGANLSQILNECLSYMCERSSDDQRMPHNMCEACLQAACHAYRFKREAEKSYCSLMSLLGHKTNIKSSGSDVCTQTEQVALLPCEMCHDQFLNSLELRLHRNRVHGKGAEEFKCKFCPQHFQQLRQLRSHLARCHDQVERLQCRYCQRPFSRRDHLLRHMRNMHKSMEQEQVEQVQETAEEEGAEEELVASAEVLLNEEEEGEPGAEECNTNPISSNEEDDENTDEAKQSLWLHIKPEPCLEVEEDLKSEKKRRRKAEPESSETEALVKDEPLTQLETVLQIKQDPDHPADSAEEDEEDAGDALHSDEDEEPFEFVEEESALEDDSDEEDSDEEGDAEGDIKPKVEIVREYLQNSKPKRRRRRNKQSEPNPENRCDVCQRTFSRHCHLLRHKLSHLEKKPHSCPHCPKAFARSDHLKAHVQSLHSNKEHKCELCQAAFARSEALERHKLSKHNGEGLQAGSELKLQLAEHTCEYCSKRFSSKTYLRKHTLLHTDFLYACKSCEETFKERQQLREHEKTHTGQRNFLCCICGDSFARNDYLRVHMRRHNGEKPYKCRYCIKAFPRATDLKVHERYHTGTKPNLCNTCGKSFHRAYNLTIHMRTHTGERPYKCDQCPKSFTQSNDLKAHIRRHTGERYKCPHCDAYFLQLYNMRNHCLSAHNKHIETKTGRLQRTGLLDESNQSHLTTVVMPPGRYQDNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDGAAFAPTAPFGAFNFPPVVMAHLMYNHGAGSGGTGGSSQHSQQSNASGSEAGK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00919254;
- 90% Identity
- -
- 80% Identity
- -