Basic Information

Insect: Lordiphosa collinella
Gene Symbol: -
Assembly: GCA_018904265.1
Location: JAEIFV010000178.1:394636-400085[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.00045 0.022 15.4 1.8 1 23 262 284 262 284 0.99

2 8 3.3e-06 0.00016 22.1 0.8 1 23 289 311 289 311 0.98

3 8 1.6e-07 8e-06 26.3 0.2 2 23 320 341 320 341 0.97

4 8 9.7e-07 4.8e-05 23.8 0.3 1 23 347 369 347 369 0.98

5 8 1.2e-07 5.9e-06 26.7 3.9 1 23 375 397 375 397 0.98

6 8 4.5e-07 2.2e-05 24.9 1.9 1 23 403 425 403 425 0.98

7 8 9.7e-06 0.00048 20.7 5.1 1 23 431 453 431 453 0.98

8 8 0.00032 0.016 15.9 0.5 1 21 459 481 459 482 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.00045	0.022	15.4	1.8	1	23	262	284	262	284	0.99
2	8	3.3e-06	0.00016	22.1	0.8	1	23	289	311	289	311	0.98
3	8	1.6e-07	8e-06	26.3	0.2	2	23	320	341	320	341	0.97
4	8	9.7e-07	4.8e-05	23.8	0.3	1	23	347	369	347	369	0.98
5	8	1.2e-07	5.9e-06	26.7	3.9	1	23	375	397	375	397	0.98
6	8	4.5e-07	2.2e-05	24.9	1.9	1	23	403	425	403	425	0.98
7	8	9.7e-06	0.00048	20.7	5.1	1	23	431	453	431	453	0.98
8	8	0.00032	0.016	15.9	0.5	1	21	459	481	459	482	0.94

Sequence Information

Coding Sequence: ATGAACGAATCTGCCGCGAGAAGAATGGGTTTCAAGCATGCCATGTTGCAGCGCAGTTATGAGTTGTCACCCTCGCCCGCTCAAATGGCCGTGGCTCCACCAGCTGCTGCCCCGGCGGGACAAGTCACCGACTTTAGCATAAGTCGCATATTGGGCAAGGAGATGAAGAAATCTTCAACGGAAGCCATAACCAACATTTTGGATCTATCGAAGGGCAGTCAACAAGTTGTGCCTTCATCTACACCATCAGCTTCCCGTCTTACTGCACCTGCACCGTATCTAGGCTACCCGCCGGATTTTCTGGCCATGGCAAATGCCACGAAATTTTATGCCCAATTTTTCCCACATCTTTTGCCCGCTTACGCGGCGGCTGCTGCAGCCGCTGGATTGAGCACACCACCCACTTCACCGTACCAGCAACAGAAACGTTATTTTGCCCCCTATGTGATCAATGGAAGCTCTCAGCAAATGCCTGTTCAATCTACAAAATCCTCTGCCTGTACTCGACCGGATTGCTTGGAATGCTTGGATTATTATAAACAACTACAGGCCGGCTATAAGACCACGCCTTTAATATCACCAGCCGCCTCTTCAGTTAGTAGCTCTAGCAGGGATCTCAGTCTCAGCGCCTCTAGCACAAATATCTCACTGACCACGGTCACAAATTTAAGTCTGAGTACGTCACAAATGCTGCCTAAATTGCCAGGAGCTACAACATCTGCATCCGTCGGCATGAGTATTAACAAACTACAGTCTTCCCATTCCGCCGCTGAGGAGATCAGCTATAAATGTCGCATATGTGACAAGGTCTTTGGCTGCTCTGAAACTTTACAGGCCCACGAGAAGACGCACAAATCACCACGCTACGAATGCTCGGACTGTGGCAAAGGATTCTCTCAGCTGCGGAACTACAAATATCATTTATCCGTTCATCGAGGCACCAAAGAATTTGCCGCCGAGTGTCCTGAATGTGGGAAAACCTTCAATGACAAGGGTTATCTGAGTAGTCACATGAAGATCCATCGGAATCGCAAAGAATACGAATGCCCTTATTGCCCGAAATCGTTCAACCAGCGTGTCGCCTTCAATATGCATGTTCGCATCCATACGGGAGTGAAGCCACACAAATGTGCCGAATGTGGAAAGAGATTCTCCAGAAAGATGCTACTCAAGCAACATATGCGTACACACAGTGGCGAGAAACCGTATCAGTGTTCGGTATGCGGCAAATCATTTGCGGATCGCAGCAACATGACCCTGCACCATCGTCTACATTCGGGCATTAAGCCCTTTAGCTGTCCTCTGTGTCCCAAGGCTTTTACCAAAAAGCATCATCTGAAGACCCATCTGAATTACCATACGGGGTGTAAGCCGTATGTGTGTCCGCATCCTAATTGCAATCAGGCCTTCACTCAGTCGAGCAATATGCGTACCCATGCCAAAAAGTGTCAATACCGACCGCTAGATGGGGTCTCAACATATCCGGTGCCCGGAAAGAACCAACAGCCAGTGCAGCAGGTGCCAACCTCGTTGGCCTTGGCCAGTTTTGTCATGCCCCCACCGCCCCCATCGGCGGCATTTCCGCCCGCCCAGCAAATGTTGCTCAGCAATTTGCGAACTTTTTGA
Protein Sequence: MNESAARRMGFKHAMLQRSYELSPSPAQMAVAPPAAAPAGQVTDFSISRILGKEMKKSSTEAITNILDLSKGSQQVVPSSTPSASRLTAPAPYLGYPPDFLAMANATKFYAQFFPHLLPAYAAAAAAAGLSTPPTSPYQQQKRYFAPYVINGSSQQMPVQSTKSSACTRPDCLECLDYYKQLQAGYKTTPLISPAASSVSSSSRDLSLSASSTNISLTTVTNLSLSTSQMLPKLPGATTSASVGMSINKLQSSHSAAEEISYKCRICDKVFGCSETLQAHEKTHKSPRYECSDCGKGFSQLRNYKYHLSVHRGTKEFAAECPECGKTFNDKGYLSSHMKIHRNRKEYECPYCPKSFNQRVAFNMHVRIHTGVKPHKCAECGKRFSRKMLLKQHMRTHSGEKPYQCSVCGKSFADRSNMTLHHRLHSGIKPFSCPLCPKAFTKKHHLKTHLNYHTGCKPYVCPHPNCNQAFTQSSNMRTHAKKCQYRPLDGVSTYPVPGKNQQPVQQVPTSLALASFVMPPPPPSAAFPPAQQMLLSNLRTF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00918369;
90% Identity: iTF_00918369; iTF_00915554; iTF_00917395; iTF_00920019; iTF_00914680; iTF_00919253;
80% Identity: -