Lcol017471.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lordiphosa collinella
Gene Symbol
-
Assembly
GCA_018904265.1
Location
JAEIFV010000100.1:87291-98532[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.00082 0.04 14.6 4.7 1 23 246 268 246 268 0.98
2 12 6.4e-05 0.0032 18.1 1.5 1 23 274 296 274 296 0.98
3 12 0.00037 0.018 15.7 3.8 1 23 302 324 302 324 0.98
4 12 0.053 2.6 8.9 11.6 1 23 593 615 593 615 0.98
5 12 2.2e-05 0.0011 19.5 0.9 1 23 621 643 621 643 0.99
6 12 1.5e-06 7.4e-05 23.2 1.9 1 23 649 671 649 671 0.99
7 12 6.6e-06 0.00033 21.2 4.6 1 23 677 699 677 699 0.97
8 12 0.0024 0.12 13.1 0.3 1 23 705 727 705 727 0.99
9 12 5.6e-06 0.00027 21.4 1.5 1 23 733 755 733 755 0.98
10 12 5.7e-06 0.00028 21.4 3.1 1 23 761 783 761 783 0.98
11 12 8.3e-06 0.00041 20.9 3.7 1 23 789 811 789 811 0.99
12 12 3.4e-05 0.0017 19.0 0.9 2 23 818 839 817 839 0.97

Sequence Information

Coding Sequence
ATGACCCAAGCAAAAAGGAAGCTAAATGTTGCTGAGCTATGCTGCGTTTGTATGGCCAATCCGGGTGCTGGTGTGGACACCAACTGGCTGAATATATACACCGACTCTGATGCGGGACAAGACTTGGCGATTATCATAGAGGAGACGACTGGCCGGAAGGTTGAGCCCACTGTGGATCTACCTGATCGCATATGCCCCTCATGCTTGGCAGAGGCAAAAATCGCTTTGAATTTTAAACGACGTTTGGAGCAGAGTCTGAAGTGCTTAAACAAGCAGAAAGAGCAGAAGGCAGTAACCAGCGTGGCAGCTCTCAAGCAAGAGGAGACCTTGCAAAGCGACAGCTTAGACGAAGGAAGCGACTCGGAAGGGAAGCTAACTGTGGCTAAGCTATGCTGTGTTTGTATGGCCAAGCCGGGTGCTGGTGTGGACACCAACTGGCTGAATATATACACCGACTCTGATGCGGGACAAGACTTGGCGATTATCATAGAGGAGACGACTGGCCGGAAGGTTGAGCCTACTGTGGATCTACCTGATCGAATATGCCCCTCATGCTTGGCAGAGGCTAGAATTGCTTTGATTTTTAAACGCCGATTGGAGCAGAGTCTGAAATGGTCAAGCAAGCAGATGGAGCAGAACGAAACCGTGAAGCAAGAGGAGACATATCAGTTAGACAGCAAATCGAAAGACGAGAGCTACGAAGAAACGGCCTTATCAAACACTGGAAAAGTACACTTCAAATGTTCCCACTGCCCAAACATGTATACCCAACAAAGCAGGCTAAGAGCTCACCTGTGCATTCATACTGGTGAACGACCCTTCAAATGTTCTAGCTGCTCAAAGGCCTTTATCTACAGGGGTGATCTCAAGAGACACAATCGAATCCATACGGGGGAACGCCCCTTCGAGTGTTCCCAGTGCTCGAATTGCTTCACCCAAATAGGACATCTGGAGGAGCACCTTCGCACGCATACTGGCGAGCGACCTTTCAATTGTTCAAGATTTGGCTGTGAAATGGCTTACAAAACAAAGGGACTAACTGTGGCCAAGCTATGCTGTGTTTGTATGGCCAGTCCGGATGATGGTGTGGACTCCAGCTGGCTGAATATATACAGCGACTCCGATGAGGGACAAGACTTGAAGATTATGATAGAGGAGACGACTGGCCGGAAGGTAAAGCCTGCTGAGGATCAACCTGAACGGATATGTTCTTCATGCTTGGCAGAGGCAAGAATTGCTCTTAACTTCAAACGGCGGTTGGAGCAGAGTCTGAAGTGCTCAAAGAAGCAGAAGGCAGTAACCAGCGTGGACGGGCGGCAGAGATTTAGCTGTGGAATGTCTTACCTAACAATTGGACTAACTGTGTCCGAGCTATGCTGCGTCTGCATGGCCAGTCCGGGTGTGGACTCCAACTGGCTGAATATATACACCGACTCTGATGCGGGACAAGACTTGACGATTATCATAGAGGAGACAACTGGCCGGAAGGTTAAGCCTACAGAGAATCTACCTGAACGGATATGCCCTTCATGCTTGGCAGAGGCAAGAATTGCTTTGAACTTCAAACGGCGATTGGAGCAGAGTCTAAAGTGCTTAGACAAAGAGACGGAAGAGAAGGAGCAGTCTGAAACCACATCCTACTTGACAGCAGTAACCAGCGTAAACGGGCAGCAGGTCAAGCAAGAGGAGACCTTGCAAAACAACACCTCAAGCGAAGGCAGCGATATGGAAGAGTTTCAATCTTTATCGGAAGAAGATACGCACACAAAAGGCGCCCACAAATGTTGTCACTGCTCGAAAACCTTTGCCTGTAGGCGCAATCTGGAGCAGCACATTCGCACACATACTGGAGAGCGACCCTTTAAGTGTTCAGAGTGCTCAATGTCTTTTACTCAACCGAGCATTCTAAGGAGACATCTACTTACTCACACTGGCGAACGACCCTTTAAGTGTTCAGAGTGTTCCTTGTCTTTTGGCCGCAGGGGCAATCTTAAGACACACCAGCGTACTCATACGGGCGAGCGACCCTTTGATTGTTCCCTTTGCTCGAAGTCATTTTCCAGTAAGCGCAATCTGGAGCAGCACCATCGCACACATACTGGCGAGCGACCCTTTAAGTGTACAGAGTGCGCAATGTCTTTTGCCCAATCGGGCATTCTAAGCAAACATCTACTTACTCACACGCCCGAGCGACCCTTCGAGTGCTCCCAGTGCTCAAAGACCTTTCGCAGTAAGCCCGATCTGGAGGTGCACTTTCGCACACATACTGGTGAACGACCTCACAAGTGTGTAGCGTGCTCAAAGTCTTTTAGCCGAAGTGGCAATCTTAAGTCACACCTACGTACTCATACTGGCGAGAGACCATTCGAGTGTTCCCACTGCTCGAAGACCTTTACCGTTAAATTCAGTCTGGAGGAGCATCTTCGCACGCATACTGGCGAACGACCTTTGAAGTGTTCAGAGTGCTCACTTTCATTTGGCCGAAGGGGTAGTCTAAGGAAACACCTACTTACTCATACACTTAAACAGATGCTCTAA
Protein Sequence
MTQAKRKLNVAELCCVCMANPGAGVDTNWLNIYTDSDAGQDLAIIIEETTGRKVEPTVDLPDRICPSCLAEAKIALNFKRRLEQSLKCLNKQKEQKAVTSVAALKQEETLQSDSLDEGSDSEGKLTVAKLCCVCMAKPGAGVDTNWLNIYTDSDAGQDLAIIIEETTGRKVEPTVDLPDRICPSCLAEARIALIFKRRLEQSLKWSSKQMEQNETVKQEETYQLDSKSKDESYEETALSNTGKVHFKCSHCPNMYTQQSRLRAHLCIHTGERPFKCSSCSKAFIYRGDLKRHNRIHTGERPFECSQCSNCFTQIGHLEEHLRTHTGERPFNCSRFGCEMAYKTKGLTVAKLCCVCMASPDDGVDSSWLNIYSDSDEGQDLKIMIEETTGRKVKPAEDQPERICSSCLAEARIALNFKRRLEQSLKCSKKQKAVTSVDGRQRFSCGMSYLTIGLTVSELCCVCMASPGVDSNWLNIYTDSDAGQDLTIIIEETTGRKVKPTENLPERICPSCLAEARIALNFKRRLEQSLKCLDKETEEKEQSETTSYLTAVTSVNGQQVKQEETLQNNTSSEGSDMEEFQSLSEEDTHTKGAHKCCHCSKTFACRRNLEQHIRTHTGERPFKCSECSMSFTQPSILRRHLLTHTGERPFKCSECSLSFGRRGNLKTHQRTHTGERPFDCSLCSKSFSSKRNLEQHHRTHTGERPFKCTECAMSFAQSGILSKHLLTHTPERPFECSQCSKTFRSKPDLEVHFRTHTGERPHKCVACSKSFSRSGNLKSHLRTHTGERPFECSHCSKTFTVKFSLEEHLRTHTGERPLKCSECSLSFGRRGSLRKHLLTHTLKQML

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-