Basic Information

Insect: Lordiphosa collinella
Gene Symbol: -
Assembly: GCA_018904265.1
Location: JAEIFV010000100.1:101193-102662[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 5e-05 0.0025 18.4 1.9 1 23 157 179 157 179 0.99

2 12 0.00038 0.019 15.7 1.9 2 23 186 207 185 207 0.97

3 12 0.00025 0.012 16.2 4.7 1 23 213 235 213 235 0.98

4 12 2.3e-06 0.00012 22.6 2.4 1 23 241 263 241 263 0.98

5 12 6.5e-05 0.0032 18.1 5.4 1 23 269 291 269 291 0.98

6 12 8.2e-06 0.0004 20.9 1.6 2 23 298 319 297 319 0.98

7 12 2.3e-07 1.1e-05 25.8 1.1 1 23 325 347 325 347 0.98

8 12 0.00026 0.013 16.2 3.2 1 23 353 375 353 375 0.98

9 12 1.1e-06 5.2e-05 23.7 2.4 1 23 381 403 381 403 0.99

10 12 0.00022 0.011 16.4 1.3 1 19 409 427 409 430 0.94

11 12 0.14 6.8 7.6 7.9 1 23 436 458 436 458 0.98

12 12 3.2e-05 0.0015 19.1 0.4 2 23 465 486 464 486 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	5e-05	0.0025	18.4	1.9	1	23	157	179	157	179	0.99
2	12	0.00038	0.019	15.7	1.9	2	23	186	207	185	207	0.97
3	12	0.00025	0.012	16.2	4.7	1	23	213	235	213	235	0.98
4	12	2.3e-06	0.00012	22.6	2.4	1	23	241	263	241	263	0.98
5	12	6.5e-05	0.0032	18.1	5.4	1	23	269	291	269	291	0.98
6	12	8.2e-06	0.0004	20.9	1.6	2	23	298	319	297	319	0.98
7	12	2.3e-07	1.1e-05	25.8	1.1	1	23	325	347	325	347	0.98
8	12	0.00026	0.013	16.2	3.2	1	23	353	375	353	375	0.98
9	12	1.1e-06	5.2e-05	23.7	2.4	1	23	381	403	381	403	0.99
10	12	0.00022	0.011	16.4	1.3	1	19	409	427	409	430	0.94
11	12	0.14	6.8	7.6	7.9	1	23	436	458	436	458	0.98
12	12	3.2e-05	0.0015	19.1	0.4	2	23	465	486	464	486	0.98

Sequence Information

Coding Sequence: ATGCCCCACAGGTCAAGAGGATTAACTGTGGCCGAGCTATGCTGCGTTTGCATGGATATTCCGGTTGCTGCTGAGGACACCAACTGGCTGAATATACACACCGACTTCGATGCAGGACAAGACTTGACGATGATCATAGAGGAGACGACTGGCCAAAAGGTCAAGCCTGCTGACGATCTACCTGGACGTATATGCCCGTCTTGCTTGGCAGAGGCAAGAATTGCTTTGAATTTCAAGCGGCGATTGGAGCAGAGTCTAAAATGCTTAAACGAAGAGAAGAAGGAAATGGTGCAGTACGAGACCACATCCAAATTGAAAGCAGTAACCAGCGTGGACGGGCAGCAGGTCAATCAAGAGAAGACCTACACCTCAAGCGATGGGAGCGATATGCAAGATTCTAAATCTTTAACTAAGGAAGAAAGCTACAAGAGTGAAGAAGAAACGGTCACAGAAATGAAAAAAGATCCCTTCAAATGTTTCTACTGCTCGAGGATCCTTAGCAGTAAGCGCAATCTGGAGGAACACCTTCGTATGCATACAGGCGAACGACCCTTGAAGTGTACAGAGTGCTCAATGTCTTTTGCCCAAACGTGCGCTTTAAGGAGACACCTAGTTACTCATGCTGGCGAACAACCTTACAAATGTTCCCACTGCTCTAAAAAGTGTAGCGGATCAACCGATCTTGAGAAACACCTATTAATCCACACCAGCGAACGACCTTTTTATTGTACAGAGTGTTCAATGTCATTTCGCCGAAGGGCCACTCTCAAGAGACACCTACTTACTCATACTGGTGATCGACCCTTTAAATGTGGCCACTGCTCGAAGACCTTTAGTTATTTGCGCAACCTGAAGCAACACAATCGCTTACATACCAGTGAGCGATCTAACAAATGTTCCCGCTGCTCGAAGACCTTTGCCAGTAAGCCCAGCCTGGAAAACCACCTTCGCACGCATACCGGCGAAAGGCCGTTCAAGTGTTCAGAGTGCGCTAAGTCTTTTGTTCAGAAGGGCAATCTACAGAGACACCAGCTTAGTCATACCGGCGAGCGACCCTTCGAATGTTCCAGCTGCTCGAAGACGTTTTGCAGTAAGCTCAATCTGGAGCTACACCTTAGCATGCATACAGGCGAGCGAAAGTTCAAGTGTTCCTACTGCCCCAAGGCCTTGAGCACAAAGGAACATCTAGAGTATCACATACGCACTCATACCGGGGAGCGACCCTTTAAGTGTTCCCACTGCTCTAGGACCTTTGCTGGTATATCCAATCTAAACAGACACAATACTACCACTAAAAAGCGGCCCTTTAAGTGTACCCTATGCTGTAAGAATTTTTGCCATAGGGGCGGTCTAAATCAGCACCTTGTCACTCATAAGTTAGAACGACCCGTTCAGTGTGCACAATGCTCGGAGGAATTTACAAGCGCTTTTGAGCTTAAGAATCATCTTCGCACTCATATAGGAGAATGA
Protein Sequence: MPHRSRGLTVAELCCVCMDIPVAAEDTNWLNIHTDFDAGQDLTMIIEETTGQKVKPADDLPGRICPSCLAEARIALNFKRRLEQSLKCLNEEKKEMVQYETTSKLKAVTSVDGQQVNQEKTYTSSDGSDMQDSKSLTKEESYKSEEETVTEMKKDPFKCFYCSRILSSKRNLEEHLRMHTGERPLKCTECSMSFAQTCALRRHLVTHAGEQPYKCSHCSKKCSGSTDLEKHLLIHTSERPFYCTECSMSFRRRATLKRHLLTHTGDRPFKCGHCSKTFSYLRNLKQHNRLHTSERSNKCSRCSKTFASKPSLENHLRTHTGERPFKCSECAKSFVQKGNLQRHQLSHTGERPFECSSCSKTFCSKLNLELHLSMHTGERKFKCSYCPKALSTKEHLEYHIRTHTGERPFKCSHCSRTFAGISNLNRHNTTTKKRPFKCTLCCKNFCHRGGLNQHLVTHKLERPVQCAQCSEEFTSAFELKNHLRTHIGE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -