Lcol009597.1
Basic Information
- Insect
- Lordiphosa collinella
- Gene Symbol
- -
- Assembly
- GCA_018904265.1
- Location
- JAEIFV010000007.1:1358041-1359330[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 7.2e-07 3.5e-05 24.2 5.5 1 23 124 146 124 146 0.99 2 11 1.7e-07 8.4e-06 26.2 1.4 1 23 152 174 152 174 0.99 3 11 1.8e-05 0.00087 19.8 4.9 2 23 181 202 180 202 0.97 4 11 4.2e-05 0.002 18.7 0.3 1 23 208 231 208 231 0.95 5 11 6.3e-06 0.00031 21.3 4.7 1 23 237 259 237 259 0.98 6 11 2e-05 0.00098 19.7 5.8 1 23 265 287 265 287 0.98 7 11 1.3e-05 0.00065 20.2 1.7 1 23 293 315 293 315 0.98 8 11 1.1e-05 0.00055 20.5 2.8 1 23 321 343 321 343 0.98 9 11 2.2e-06 0.00011 22.7 3.0 1 23 349 371 349 371 0.99 10 11 2e-05 0.00099 19.7 1.6 3 23 379 399 377 399 0.98 11 11 5.5e-06 0.00027 21.4 0.9 1 23 405 427 405 427 0.98
Sequence Information
- Coding Sequence
- ATGGCCCACACAACAAGGGGACTAACTGTGGCCGAGCTATGCTGTGTGTGCATGGCCATTCCGACTGCTGGTGTGGCCACCAACTGGCCGAATATATACACCAACTCCGTTGAAGGACAAGACTTGACGATTATAATAGAGGAGACAACTGGCCGGAAGGTTAAGCCTGCTGATGATCTACCTGGACGCATATGCCCCTCATGCTTGGCAGAGGCAACAATTGCTTTGAACTTCAAGCGGCGATTGGATCGGAGTTTGAAGTGCTTCAAGGAGCGGAACACCACCACGGACGGACAGAATATCAAGCAAGAGAACAGCACAAGCGAAGTTAGCGAATTTTTATTGGAAGAAAACAAAGAGAAATCTCCCTTTCAATGTTCCCATTGCACAAAGGATTTTACTCGCAAAACCTGGTTAACAAGACACCTTCGCACTCATACTGGAGAGCGGCCTTTCAAGTGTTCAGAGTGCTCCATGTCTTTTGCCCAAAAGGGCAATCTAAAGAGTCACCTACGCACTCATACTGGCGAGCAACACCTCGAATGTTCCCAGTGCTCGAAGACCTTTACCAGTAAGCGACATCTGCAGGATCATTTTCGCACACACACTGGCGAACGACCTCACAAATGTACAGAGTGCCCAATGGCTTTTGTCCGAGTTGGCAGTCTAAAGAGACACCTACTACTTATTCATACTAGAGAACAAAACTTCGAATGTTCCCACTGCTCAAAGACCTTTAACAGTAAGATCAACATGGAGAAGCACCTTCGCAAACATACTGGCGAGCGACCCTTCGAATGTTCCCACTGCTCAAAGTCCTTTAGCCACATAGGACATCTAAAGATTCACCTTCGCTGGCATACTGACGAACGACCTCACAAATGTACAGAGTGCTCAATGTCTTTTATCAAAGCGGATACTCTAAGGAGACACCTTATGATTCATACCGGCGAGCGACCCTTCGTATGTGCCCACTGCCCAAAAACATTTTACACTAAGCGCACCATGGAGGACCACCTTCGCACGCATACTGGAGAACGACCCTTTAAGTGTTTAGAGTGCTCAAAGACTTTTGCCCAAGCGAGCTGTCTGCGGAGACACCTACTTACTCATACTGACGAGCGACCCTTCGGGTGTTCCCACTGCCCAAAGGCATTTAACATTAAGCGCAACCTGGAGGACCACCTTCGTACGCATACTGGAGAACGACCCTTCAAGTGTTTAGAGTGCTCAAAGACTTTTGCCCAAACTGGCACCTTAAAGAGACACCTACTTATTCATACTAAGTGA
- Protein Sequence
- MAHTTRGLTVAELCCVCMAIPTAGVATNWPNIYTNSVEGQDLTIIIEETTGRKVKPADDLPGRICPSCLAEATIALNFKRRLDRSLKCFKERNTTTDGQNIKQENSTSEVSEFLLEENKEKSPFQCSHCTKDFTRKTWLTRHLRTHTGERPFKCSECSMSFAQKGNLKSHLRTHTGEQHLECSQCSKTFTSKRHLQDHFRTHTGERPHKCTECPMAFVRVGSLKRHLLLIHTREQNFECSHCSKTFNSKINMEKHLRKHTGERPFECSHCSKSFSHIGHLKIHLRWHTDERPHKCTECSMSFIKADTLRRHLMIHTGERPFVCAHCPKTFYTKRTMEDHLRTHTGERPFKCLECSKTFAQASCLRRHLLTHTDERPFGCSHCPKAFNIKRNLEDHLRTHTGERPFKCLECSKTFAQTGTLKRHLLIHTK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -