Lcol017457.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lordiphosa collinella
Gene Symbol
-
Assembly
GCA_018904265.1
Location
JAEIFV010000100.1:34628-36130[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 1.5e-05 0.00072 20.1 4.7 1 23 154 176 154 176 0.98
2 12 1.9e-05 0.00092 19.8 2.2 1 23 182 204 182 204 0.99
3 12 3.8e-06 0.00019 21.9 4.1 1 23 210 232 210 232 0.99
4 12 8.7e-07 4.3e-05 24.0 5.5 1 23 238 260 238 260 0.98
5 12 2.3e-05 0.0011 19.5 3.2 1 23 266 288 266 288 0.98
6 12 1.9e-05 0.00095 19.7 0.6 1 23 294 316 294 316 0.98
7 12 2.5e-06 0.00012 22.5 1.4 1 23 322 344 322 344 0.98
8 12 8.5e-07 4.2e-05 24.0 2.9 1 23 350 372 350 372 0.99
9 12 2e-06 9.6e-05 22.9 1.5 1 23 378 400 378 400 0.98
10 12 5.6e-06 0.00028 21.4 5.3 1 23 406 428 406 428 0.98
11 12 0.00015 0.0076 16.9 5.7 1 23 434 456 434 456 0.94
12 12 6.3e-06 0.00031 21.3 1.3 1 23 462 484 462 484 0.98

Sequence Information

Coding Sequence
ATGGCCCACAGAACACGGGGGCAAGCTGTGGACGAGCTATGCTGTGTTTGCATGGCCAGTCCTGGTGCTGCAGAGGACAACAACTGGCTGAATATATACACCGACACCGATGAGGGACAAGACTTGAAGATATTAATAGAGGAGACGACTGGCCGAGAGGTCAAGCCCGCTAAGGATCTACCTGGTCGCATATGCCCCTCATGCTTGACAGCGGCCAAAATTGCTTTGACTTTCAAGCGGCGACTGGAGCAGAGTGTAAGGAGCTTCGCCAAGCAGATGGAGCAGAACACAACCGCTTCCTACTTGAAAGCCATAACCAGCGTGCAGCAGGTTAAGCAAGAGGAGACCTTACATAGCGACACTTCAAGCGAAGGAAGCGATATGGAAGAGTCTGAATCTGTAATGGACGAAGAAGAAGAGATCAACACAAACCTCGGAAAAGCCAGAGGCGCTAAACGCTTCGAATGTTCGCACTGCTCGAAGAGTTTTACCAGAAAGTTCTCTCTAGGGGAGCACCTTCGCAAGCATACAGGCGAACGACCGTTCAAGTGCTCAGAGTGCGAAATGTCTTTTGGTCAAAGGGTCCATCTAAAGAGTCATCTACTCACTCATACTGACGAGCAACCCTTCAAATGTTCGTACTGCTCAAAGATCTTTAGCCGAAAAAGATATTTAACGTCACACCTAAGCACTCATACCGGTGAACGACCCCACGAATGTACTTACTGCTCGAGGTCCTTTAGCCGAAAATACTCTCTGACGACACACCTTCGCACGCATACTGGCGAACAACCCCATAAATGTTCCCTCTGCTCGATGAGCTTTAACAGAAAACCCACTCTGGAGCAGCACTTGCGCACGCATACTGGCGAAAGACCTTTCAAGTGCACAGAGTGCCCAATGTCTTTTGGCCAAAGTGGAGCTCTAAGCAGACACCGATTTACTCATTCTGGCGAGCGACCCTTCGAATGTTCTCAGTGCCCGAAGACCTTTAACAGTAAGCGAAATCTGGATGAACACCAGCGCCTTCATACTGGCGAGCGATCGTATGAATGTCCCCACTGCACAAAGACCTTTAGCCGAACTGGTTATCTAAAGACACACCTTATAACGCATACTGGCGAGCGACCGTTCGAGTGCTCAGAGTGCTCAATGTCGTTTGGCCGAAAGAGCACCCTAAAAAAACACCTACTTACTCATACCGGCGAACGTCCTTTCGAATGTTCCCACTGCTCGAGGACCTTCACCCAAAAAGACGCCCTGAAAAGGCATCTTCACATACATACTGGAGAACGACCCTATGCATGTTCCCACTGCTCTAAAACTTTTAGCCAAGCATACGATTTAAGGAAACACTGCCTTACCCATACCGGCAAGCAACGCTTCGAATGTTCCCAGTGTTCGATGACTTTTACCCGAGAAAGATATTTAAAGGCACACCTTAGGATTCATACTGGTGAAAGATTGTTAAATGAGCCCATTGCCCAAGAACCCTTGGTCTAA
Protein Sequence
MAHRTRGQAVDELCCVCMASPGAAEDNNWLNIYTDTDEGQDLKILIEETTGREVKPAKDLPGRICPSCLTAAKIALTFKRRLEQSVRSFAKQMEQNTTASYLKAITSVQQVKQEETLHSDTSSEGSDMEESESVMDEEEEINTNLGKARGAKRFECSHCSKSFTRKFSLGEHLRKHTGERPFKCSECEMSFGQRVHLKSHLLTHTDEQPFKCSYCSKIFSRKRYLTSHLSTHTGERPHECTYCSRSFSRKYSLTTHLRTHTGEQPHKCSLCSMSFNRKPTLEQHLRTHTGERPFKCTECPMSFGQSGALSRHRFTHSGERPFECSQCPKTFNSKRNLDEHQRLHTGERSYECPHCTKTFSRTGYLKTHLITHTGERPFECSECSMSFGRKSTLKKHLLTHTGERPFECSHCSRTFTQKDALKRHLHIHTGERPYACSHCSKTFSQAYDLRKHCLTHTGKQRFECSQCSMTFTRERYLKAHLRIHTGERLLNEPIAQEPLV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-