Lcol015940.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lordiphosa collinella
Gene Symbol
-
Assembly
GCA_018904265.1
Location
JAEIFV010000114.1:49401-50912[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 1.8e-06 9.1e-05 22.9 8.3 1 23 137 159 137 159 0.99
2 13 5.1e-07 2.5e-05 24.7 4.1 1 23 165 187 165 187 0.99
3 13 7.4e-05 0.0036 17.9 4.0 1 23 193 215 193 215 0.98
4 13 4.6e-07 2.2e-05 24.8 3.8 1 23 221 243 221 243 0.99
5 13 5.1e-06 0.00025 21.6 3.2 1 23 249 271 249 271 0.98
6 13 1.1e-05 0.00052 20.6 4.2 1 23 277 299 277 299 0.98
7 13 1.3e-05 0.00062 20.3 1.2 1 23 305 327 305 327 0.99
8 13 8.3e-07 4.1e-05 24.0 4.9 1 23 333 355 333 355 0.99
9 13 0.00011 0.0055 17.3 1.6 1 20 361 380 361 382 0.96
10 13 4.4e-05 0.0021 18.6 8.1 1 23 388 410 388 410 0.98
11 13 6.2e-07 3e-05 24.4 4.4 2 23 417 438 416 438 0.97
12 13 9.8e-06 0.00048 20.7 0.5 1 23 444 466 444 466 0.99
13 13 2.3e-05 0.0011 19.5 6.7 1 23 472 494 472 495 0.96

Sequence Information

Coding Sequence
ATGGCCGAGCTATGCTGCGTTTGCATGGCCATTCCGGATGCTAAGGCGGACACCAAATGGCGGAATATATACACGGACTCTGATGCGGGACAAGACTTGATCTTAATAATAGAGGAGACGACTGGCAGAGAGGTCAAGATTGCTGAAGATCTACCTGGACGCATATGCCCCTCATGCTTGGCAATGGCAAAAACTGCTTTGAATTTCAAGCGACGATTTGAGCAGAGTGTTAAGTGCTTCGCCGATCAGATGGAGCAGAATGGAACTTCATCCTACTTGAAAGCAGTAACCAAAGTGGACGGGCCGAAGATTGAGGAAGACACATTAAGCGAAGGAAGCGATATGAAAGAGTTTGAATCTTTATCGGAAGAAGAGAGCTTCAAGAGCATTGAAGAGAGAAAGGGTCGCTTTAAATGTAGCCACTGCTCGAAAACCTGTTCCAATAAGTCCAACCTTAATCAGCACCTTCGCACGCATACTGGCGAACGACCGTTCAAGTGTTCTGAGTGCTCAAAGTCGTTTTCCCATAGTGGCACTCTAAAAAGGCACCTTCTTACTCATACTGGCGAGCGTTCCTTCGAATGTTCTCAATGCTCGAGGACCTTTAATAACAAGTTCACCTTCAAGTTGCACCTTCGCATGCATACTGGCGAACGACCGTACAGGTGTTCGGAATGCTCAAAGTCATTTTCCCATAGTGGCACTCTAAAAAGGCACCTTCTTACTCATACTGGCGAGAGACCATTCGAATGTTCCTACTGCTCAACAACGTTTTACAATAAGCGCGATCTGAAGAAGCACCTTCTCACACATTCTGGCGGGCGACCCTATGATTGCTCCCACTGCTTACAGACATTTATCCAGAAGTCCCACCTGGAGGTGCATCTTCGCACGCATACGGGCGAACGACCGTTCAAGTGCTCAGAGTGCTCAATATCTTTTGCCCATTTGGGCAGTTTAAAGAATCACCTAATTACTCATAAGGACGAGCAACCATTCAAATGTTCTCACTGCTCGAAGACCTTTGGAAGAAAGAAAAATCTGGAGGAGCACCTTCGCACGCATACGGGCGAACGACCTTTCAAGTGCCCAGCATGTTCAATGTCTTTTGCCCATAGTAGCTCCTTAAAGAAACACATTACTCATTCTGACGATCATCCATTCGAATGTTCCCACTGCTCGAAGACGTTTTGCAATAAGCGCAATCTGAAGGAGCATCTTTTCACGCATACCAGCGAACGACCACTCGAATGTTCCCACTGCTCGAAGACCTTTAACAGAAAGTCCACCCTGAAGGTCCACCTTCGCACACATACGGGCGAACGACCTTTCAAGTGTCCAGAGTGCTCAATGTCTTTTGCCTATAGTAACTCGGTAACGAGACACATACTTACTCATACTGGCGAGCGTCCCTTTGAATGCTCCCACTGCTCAAAGACGTTTTACAGTAAGCGCGATCTGAAGGGGCATCTTCGCACGCATCACCAACTTACTCCAGAATGTCTGAGATAA
Protein Sequence
MAELCCVCMAIPDAKADTKWRNIYTDSDAGQDLILIIEETTGREVKIAEDLPGRICPSCLAMAKTALNFKRRFEQSVKCFADQMEQNGTSSYLKAVTKVDGPKIEEDTLSEGSDMKEFESLSEEESFKSIEERKGRFKCSHCSKTCSNKSNLNQHLRTHTGERPFKCSECSKSFSHSGTLKRHLLTHTGERSFECSQCSRTFNNKFTFKLHLRMHTGERPYRCSECSKSFSHSGTLKRHLLTHTGERPFECSYCSTTFYNKRDLKKHLLTHSGGRPYDCSHCLQTFIQKSHLEVHLRTHTGERPFKCSECSISFAHLGSLKNHLITHKDEQPFKCSHCSKTFGRKKNLEEHLRTHTGERPFKCPACSMSFAHSSSLKKHITHSDDHPFECSHCSKTFCNKRNLKEHLFTHTSERPLECSHCSKTFNRKSTLKVHLRTHTGERPFKCPECSMSFAYSNSVTRHILTHTGERPFECSHCSKTFYSKRDLKGHLRTHHQLTPECLR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-