Lcol008369.1


Basic Information
Transcription Factor Domain
Sequence Information
Similar Transcription Factors

Basic Information

Insect
Lordiphosa collinella
Gene Symbol
-
Assembly
GCA_018904265.1
Location
JAEIFV010000481.1:119903-122224[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 9.8e-06 0.00048 20.7 2.1 1 23 177 199 177 199 0.97
2 20 8.3e-05 0.0041 17.7 4.1 1 23 205 227 205 227 0.99
3 20 0.00052 0.026 15.2 7.7 1 23 233 255 233 255 0.98
4 20 7.4e-07 3.6e-05 24.2 2.0 1 23 261 283 261 283 0.99
5 20 0.0039 0.19 12.5 4.5 1 23 289 311 289 311 0.98
6 20 3.1e-05 0.0015 19.1 4.0 3 23 319 339 317 340 0.96
7 20 0.0019 0.091 13.5 4.8 1 22 354 375 354 375 0.97
8 20 0.043 2.1 9.2 6.1 1 23 382 404 382 404 0.98
9 20 0.00015 0.0072 17.0 0.5 1 23 410 432 410 432 0.98
10 20 7.7e-05 0.0038 17.8 4.8 1 23 438 460 438 460 0.99
11 20 1.5e-07 7.5e-06 26.3 4.4 1 23 466 488 466 488 0.99
12 20 0.015 0.74 10.6 2.8 1 23 494 516 494 516 0.98
13 20 0.00041 0.02 15.6 4.5 1 23 522 544 522 544 0.98
14 20 3.1e-05 0.0015 19.1 4.0 3 23 552 572 550 573 0.96
15 20 0.00029 0.014 16.0 2.2 1 22 587 608 587 608 0.97
16 20 0.01 0.51 11.1 3.2 1 23 615 637 615 637 0.98
17 20 3e-05 0.0015 19.1 0.6 1 23 643 665 643 665 0.98
18 20 7.7e-05 0.0038 17.8 4.8 1 23 671 693 671 693 0.99
19 20 1.3e-06 6.5e-05 23.4 6.4 1 23 699 721 699 721 0.99
20 20 0.012 0.57 11.0 3.6 1 23 727 749 727 749 0.98

Sequence Information

Coding Sequence
ATGGTTGAGCAATGTCGCGTTTGCATGTCCATTTCGGCGGAGGGTATCAACACCAACTGGCGAAATATATTCAACGACGCGGAGCAGGGCGGCTTGATGTTTATAATAGAGGAGGTGACTGGCAGCGTGATTAAACCTGATGAGGATCTTCCCCAATGGATATGCCCTATATGCTTGGCGGCGGCAAAAACTGCATTTAGTTTCAAGCGGCGGTATGAGAAAAGTGTGGAGAACCTCCAGCTGATTAAGCAGGATTGGGCGCAGCGTCAGGTCCAGTTAGAGGAGGAGTCAAAGTTGGTGGAAGAGAACGATACCACATCATTCTTGGAAGAACTGACCAACGAGGACTGGACGCAGGTCAGGCGAAAAGACATCTTAAAGAGTGAACGCGATGAGAGAGGAAATGAAGAGTTCGAATCGCTCTCAGGTGACGAATGTGTGGAGACCGCATGGAATCTGCTCGAAACTAGCACACGCTGCTTAAACCCCTTCACAGAAAAATCCAAACTACAAACTGACGAGCGACCATACACGTGTTCCCACTGCTGGAAGACATTTGCCTCCAGGAGTAGTCTAAAGGTTCACTCACTCATTCATAATGACGAGCGACCCTACAAGTGTTCCCACTGCTTGAAAACTTTTACTAGCGAGCGCAGTCTAAAGGTTCACTCACGCATACACACGGAACAGCGACCCCACAAGTGTTCCCACTGCTTAAAGGCATTTAAGATTAAAACCCACCTGGAGACTCACATCCGCACTCACACCGGAGAACGACCCTTTAAATGTTCAGATTGCTCGAAAAGCTTTAGCAGAAAATCCATCCTAGAGAATCATATTCGCACTCACACCGGAGAACGACCCTTCGAGTGTTCACACTGCTTGAACAAATTTGCCCACAGCAGCAGTCTAAGGCTTCACTTACTCAGACATATGACCGAGCGAACCTTCGGATGTTCACATTGCTTGAAGAGCTTCACCCAAAATGGCGACCTACAGGAGCACCTTCGCACTCATCATTCTGCCGAAAACCCCAAACTCGAGCGTTCTCAATTATCACACAAGTGTTCCCACTGCTTGAAAACCTTTCACCTAAAAACTGATCTGGAAAGGCACATTCGCACTAATACTGGCGAAAGACCCTTCGAATGCTCCCATTGCTCGAAGGCATTTGAACTAAAATGCCGTCTGGAGATTCACATATGCAGTCACACTGACGAACGACTCTTCGAATGTTCTAACTGCTTGAAAACTTTTGCTGACGAGCGCAGTCTATCGGTTCACACACGCATACACACGGCCGAGCGACCCTACAAGTGTTCCCACTGCTTAAAGGCCTTTAAGATAAAAACCCACCTGGAGACTCACATCCGCATTCACACTGGAGAACGACCCTTCAAATGTTCACATTGCTCGAAAAGCTTTAGCAGAAAAGCCACTCTAGAGAATCATATTCGCACTCACACCGGAGAACGTCCCTTCGAATGTTCATTTTGCTCGAAATGCTTTAGCGGAAAACGTATCCTAGATGAGCATATTCGTTCGCACACCGGAGAACGACCCTTCGAATGTTCCCACTGCTCAAAGAAATTTGCCCACGGCAGCAGTCTAAGGCTTCACTTACTCAGACATATGACCGAGCGAACCTTCGGATGTTCACATTGCTTGAAGAGCTTCACCCAAAATGGCGACCTACAGGAGCATCTTCGCACTCATCATTCTGCCGAAAAACCCAAAATCGAGCGTTCTCAATTATCACACAAGTGTTCCCACTGCTTGAAAACCTTTAACCTAAAAACTGATCTGGAATGGCACATTCGCACTAATACTGGCGAAAGACCCTTCGAATGCTCCCATTGCTCGATGGCATTTGAACTAAAATGCCGTCTGGAGATTCACATACGCAGTCACACTGACGAGCGACCCTTCGAATGTTCTAACTGCTTGAAAACTTTTGCTAACGAGCGCAGTCTAACGGCTCACACACGCATACACACGGGCGAGCGACCCTACAAGTGTTCCCACTGCTTAAAGGCCTTTAAGATAAAAACCCACCTGGAGACTCACATCCGCATTCACACTGGAGAACGACCCTTCGAATGTTCCCATTGCTCGAAATGCTTTCGCAGAAAAGCCACTCTAGAGAATCATATTCGCACTCACACCGGAGAACGTCCCTTCGAATGTTCATTTTGCTTGAAATGCTTTAGCAGAAAACGTATCCTAGATGAGCATATTCGTTCGCACACCGGAGAACGCTCGCACACGCACCCTTCGAATGTTCCCACTGCTCAAAGAAATTTGCCCACGGCAGCAGTCTAA
Protein Sequence
MVEQCRVCMSISAEGINTNWRNIFNDAEQGGLMFIIEEVTGSVIKPDEDLPQWICPICLAAAKTAFSFKRRYEKSVENLQLIKQDWAQRQVQLEEESKLVEENDTTSFLEELTNEDWTQVRRKDILKSERDERGNEEFESLSGDECVETAWNLLETSTRCLNPFTEKSKLQTDERPYTCSHCWKTFASRSSLKVHSLIHNDERPYKCSHCLKTFTSERSLKVHSRIHTEQRPHKCSHCLKAFKIKTHLETHIRTHTGERPFKCSDCSKSFSRKSILENHIRTHTGERPFECSHCLNKFAHSSSLRLHLLRHMTERTFGCSHCLKSFTQNGDLQEHLRTHHSAENPKLERSQLSHKCSHCLKTFHLKTDLERHIRTNTGERPFECSHCSKAFELKCRLEIHICSHTDERLFECSNCLKTFADERSLSVHTRIHTAERPYKCSHCLKAFKIKTHLETHIRIHTGERPFKCSHCSKSFSRKATLENHIRTHTGERPFECSFCSKCFSGKRILDEHIRSHTGERPFECSHCSKKFAHGSSLRLHLLRHMTERTFGCSHCLKSFTQNGDLQEHLRTHHSAEKPKIERSQLSHKCSHCLKTFNLKTDLEWHIRTNTGERPFECSHCSMAFELKCRLEIHIRSHTDERPFECSNCLKTFANERSLTAHTRIHTGERPYKCSHCLKAFKIKTHLETHIRIHTGERPFECSHCSKCFRRKATLENHIRTHTGERPFECSFCLKCFSRKRILDEHIRSHTGERSHTHPSNVPTAQRNLPTAAV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-