Lcol019690.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lordiphosa collinella
Gene Symbol
-
Assembly
GCA_018904265.1
Location
JAEIFV010000775.1:65630-67207[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 8.7e-05 0.0043 17.7 7.1 1 23 125 147 125 147 0.99
2 14 3.2e-06 0.00016 22.2 6.8 2 23 154 175 153 175 0.97
3 14 1.3e-05 0.00065 20.2 4.6 1 23 181 203 181 203 0.98
4 14 2.7e-05 0.0013 19.3 2.4 1 23 208 230 208 230 0.99
5 14 0.00021 0.01 16.5 2.2 2 23 237 258 236 258 0.97
6 14 3.2e-07 1.6e-05 25.3 5.5 1 23 264 286 264 286 0.99
7 14 1.5e-06 7.5e-05 23.2 1.5 1 23 292 314 292 314 0.98
8 14 2.2e-06 0.00011 22.7 2.4 1 23 320 342 320 342 0.98
9 14 2.3e-06 0.00011 22.7 2.6 1 23 348 370 348 370 0.99
10 14 3.3e-07 1.6e-05 25.3 1.0 1 23 376 398 376 398 0.98
11 14 4.3e-06 0.00021 21.8 1.1 1 23 404 426 404 426 0.99
12 14 1.4e-06 7.1e-05 23.3 0.8 1 23 432 454 432 454 0.99
13 14 0.00014 0.0068 17.0 5.4 1 23 460 482 460 482 0.97
14 14 2.1e-05 0.001 19.6 6.7 1 23 488 510 488 510 0.98

Sequence Information

Coding Sequence
ATGTTCCCGGAAGCAAAGGGGCCAAATGTGGCCGAGCAATGTCGCGTTTGCATGTGCAGTTTGGCTGATGGCTGCAACTCCGACTGGCGAAATATATACACCGACACGGAAGAGGAATCAGAAGGCTTGATGTTTATAATAGAAGAGGTGACTGGACTCAGGGTTAGAGCGGATGAGGATCTGCCTGATAAAATATGCCCCTCATGCTTGGCAGAGTCAAAAATTGCATTTGGTTTCAAGCGGCGTTTTGAGGAGAGTTTTCTGCTGATGAAGCAACGGGAGAGAACCATCAAAATCGAAGACCAAAGCGAAGAAAGTGATAACGAAAACAGCAGCGAAGAGAGCGATGGGACAGAGACGTTAGTACGTCCCTTTCAATGTACCCACTGCTCGAAATCTTACATGCATCAAAAAAGTCTCAAAGTACACCTACGCTCTCATTCAGTGGAACGACTCCTCTCATGTGAACACTGCTCAAAGACTTTTAATCGCAAATCCCTTCTAAGGCATCACCTACGCACTCATTCCGGCGAGCGACCCTACAAGTGTTCACACTGCTCAAAATCATATACCGGCAAGGGCAGTCTTAACAGACATCTACGCTTTCATTCTGACGAACCCTTCCAGTGTTCCCAATGCTCACAGACTTTTAAACAAACCAAAGATCTAAGGGAACACCTACTGACCCATACCGGCGAATGCCCACTGCAATGTTCCCACTGCTCGAAAACCTTTCTCGAAGCGAGCAGCCTCCAGAGACACCTTCTCACTCATGCTGAAGTGCGTCCCTTCGAGTGTTCCTACTGCTCGAAAACCTTTTGCGAGAATAGCAACCTAAAGAGGCACCTACGCACTCATACGGGCGAGCGTCCCTACGAATGCTCCCAGTGCTCGAAAACCTTTAGCGAGAGTGGCAGTCTAAAGAAACACCTACGCCTCCATTCTGGCGAACGTCCCTTCGAGTGTCCCCATTGCTCGAAGACATTTGCAGTTAGGGGTAATCTAAGGGAACACATTCACACTCATAAGGCCGAAAGACCCTTCCAGTGTCCACACTGTTCAAAGACATTTGGAGTAAATGGAAAACTAAAGCAACACCTACGCACTCATTCAGACGAACGACCCTTCGAATGTGCCCAATGCTCAAAAGCATTTCGCGATAAAGGCACTCTAACAAGACACTTACGCACTCATACTGGCGTAAAACCCTACGAATGTCCAGAGTGCTTAAAAAGTTTTGCAGAGAAGTGTAATCTAAAGGAACACCTACGCATACATTCAGCCGAACGACCTTTCGAATGTTCCCTATGCTCGAAAACTTTTGGCGAAAAAGCCAGCCTAAACAGACACATACGCACGCATACGGGGGAGAGACCTTTCAAGTGTTCCCACTGCTCGAAAACCTTTACGGGAAGAAGCGGTCTTCAGGATCACCTACACAATCATACGGGTGAAAGGCGCTTCGAATGTAACCACTGCTCCAAGACTTTCACCCATAGAAGCAGTCTTAAGTATCACCTGGGCACACATAATAATGAAGAAATTCAGCCTCCAGGGGATGTGCCTGGGGAACTCTGA
Protein Sequence
MFPEAKGPNVAEQCRVCMCSLADGCNSDWRNIYTDTEEESEGLMFIIEEVTGLRVRADEDLPDKICPSCLAESKIAFGFKRRFEESFLLMKQRERTIKIEDQSEESDNENSSEESDGTETLVRPFQCTHCSKSYMHQKSLKVHLRSHSVERLLSCEHCSKTFNRKSLLRHHLRTHSGERPYKCSHCSKSYTGKGSLNRHLRFHSDEPFQCSQCSQTFKQTKDLREHLLTHTGECPLQCSHCSKTFLEASSLQRHLLTHAEVRPFECSYCSKTFCENSNLKRHLRTHTGERPYECSQCSKTFSESGSLKKHLRLHSGERPFECPHCSKTFAVRGNLREHIHTHKAERPFQCPHCSKTFGVNGKLKQHLRTHSDERPFECAQCSKAFRDKGTLTRHLRTHTGVKPYECPECLKSFAEKCNLKEHLRIHSAERPFECSLCSKTFGEKASLNRHIRTHTGERPFKCSHCSKTFTGRSGLQDHLHNHTGERRFECNHCSKTFTHRSSLKYHLGTHNNEEIQPPGDVPGEL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-