Basic Information

Insect: Lordiphosa collinella
Gene Symbol: -
Assembly: GCA_018904265.1
Location: JAEIFV010000481.1:83147-84709[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 1.1e-05 0.00052 20.5 3.3 1 23 118 140 118 140 0.98

2 14 2.4e-08 1.2e-06 28.8 3.0 1 23 146 168 146 168 0.99

3 14 1.5e-06 7.3e-05 23.2 4.7 1 23 174 196 174 196 0.98

4 14 3.2e-06 0.00016 22.2 4.0 1 23 202 224 202 224 0.99

5 14 9.6e-07 4.7e-05 23.8 3.6 1 23 230 252 230 252 0.98

6 14 5e-06 0.00024 21.6 3.3 1 23 258 280 258 280 0.98

7 14 6.7e-07 3.3e-05 24.3 4.9 1 23 286 308 286 308 0.99

8 14 1.6e-07 8e-06 26.3 5.0 1 23 314 336 314 337 0.96

9 14 4.3e-05 0.0021 18.6 2.9 1 23 351 373 351 373 0.98

10 14 4.2e-06 0.00021 21.8 3.4 1 23 379 401 379 401 0.98

11 14 1e-07 5e-06 26.9 4.4 1 23 407 429 407 429 0.98

12 14 7.5e-07 3.7e-05 24.2 2.6 1 23 435 457 435 457 0.98

13 14 2.3e-06 0.00011 22.7 2.9 1 23 463 485 463 485 0.99

14 14 1.3e-05 0.00061 20.3 3.5 1 23 491 513 491 513 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	1.1e-05	0.00052	20.5	3.3	1	23	118	140	118	140	0.98
2	14	2.4e-08	1.2e-06	28.8	3.0	1	23	146	168	146	168	0.99
3	14	1.5e-06	7.3e-05	23.2	4.7	1	23	174	196	174	196	0.98
4	14	3.2e-06	0.00016	22.2	4.0	1	23	202	224	202	224	0.99
5	14	9.6e-07	4.7e-05	23.8	3.6	1	23	230	252	230	252	0.98
6	14	5e-06	0.00024	21.6	3.3	1	23	258	280	258	280	0.98
7	14	6.7e-07	3.3e-05	24.3	4.9	1	23	286	308	286	308	0.99
8	14	1.6e-07	8e-06	26.3	5.0	1	23	314	336	314	337	0.96
9	14	4.3e-05	0.0021	18.6	2.9	1	23	351	373	351	373	0.98
10	14	4.2e-06	0.00021	21.8	3.4	1	23	379	401	379	401	0.98
11	14	1e-07	5e-06	26.9	4.4	1	23	407	429	407	429	0.98
12	14	7.5e-07	3.7e-05	24.2	2.6	1	23	435	457	435	457	0.98
13	14	2.3e-06	0.00011	22.7	2.9	1	23	463	485	463	485	0.99
14	14	1.3e-05	0.00061	20.3	3.5	1	23	491	513	491	513	0.98

Sequence Information

Coding Sequence: ATGGTTGAGCAATGTCGCGGTTGCATGTCCATTTCGGCGGATGATACCAACACCAACTGGCGGAATCTATTCAACGACGTGGAGCAGGGCGGCTTAATGTTTATAATAGAGGAGGTGACTGGAAGTGTGATTAGACCTAATGACGATCTACCCCAATGGATATGCCCTTCATGCTTGGCGGCGGCAAGAACTGCATTGAGTTTCAAGCGGCGGTTTGAGAAAAGTCTGAAGAGCCTTCAGCTGAAGAAGCAAAACGAAACAACCGCCTTGGATGCGTTTGTCAACGAGGAGGAGGAGGATATCTTCAAAAGTGAAGAAAATGAAAAGGAAGATGATGGCTTGGACCGACCCTACAAGTGTTCCCACTGCCCGAAGACCTTTAACCAAAAAGTCACTCTGGACAGGCACACCAGCATTCATACTGGCGACCGACCTTTCAAGTGTCCCCATTGTTCGAAGACCTTTATCCAAAAATACAATCTGGTGAGGCACATACGCGTTCATACAGGAGAACGACCGTTCGATTGTTCCCACTGCTCGAAGACTTTTACCGACAAAAACAGTCTAAATCAACATCTGCGCACTCATGCTGATCAGCGACCATACAAATGTTCCCACTGCTTGAAGACGTTTAAGCAAAAAGTCTCCCTGGAGACTCACCTACGCATTCACACTGGCGAACGGCCCTTCAGCTGCTCACACTGCTCGAAGACTTTTAAGCAGCAAAGCAGTCTTAAGGTTCACTTACTCGTTCACACTGGCGAGCGACCGTTCGAGTGTACGCATTGCTCCAAAAGCTTTGCCAAAAAATACAGTCTAGAGGAGCACACACGTATCCACACCGGAGAACAACCCTTCAAGTGTTCCCACTGCTCGAAGACGTTTACCCAATATAGCAGTCTAAAGGTCCACCTACGCATTCACACTGGCGAGCGACCCTATGAATGTTCACATTGCTCGAAGAGCTTTACCCAAAATGGCAACCTGCAGGAGCATCTTCGCACTCATCACTCTGCCGAAAAACCCAAAGTCAAGCGTTCTCAATCATCACACAAGTGTTCCCAGTGCTTGAAGACCTTTGGCCTACGAGCCGATCTGAAGAGGCACATTCGCACTCATACTGGCGAACGGCCCTTCGAATGCTCACATTGCTCGAAGACTTTTACCGAAAAAGGCAGTTTAAAACAGCATCTACTCACTCATACTGGCGAGCGACCATTCGAGTGTTCACATTGCTCCAAAAGCTTTAGCAGAAAAAGCAGTCTAAAGGAGCATATTCGTTCGCACACCAAGGAACAACCCTTTGAATGTTCCCACTGCTCGAAGACCTTTACCCAAAGGAGCAGTCTAAATGTTCACTTACTCATTCATACAGGCGAGCGACGCTTCAAATGTTCATATTGTTCGAAGACCTTTTATCAGTCAAGCAGTTTGAAGGGCCACCTACTAACACATACAGGCGAGCGACCCTTCGAGTGTCAACATTGCTCGAAGACCTTTGCCCAAAGGGGCAGTCTTAAGTATCACCTAAGCACTCATAATAAAAAACAAAGTCAGAAGTGA
Protein Sequence: MVEQCRGCMSISADDTNTNWRNLFNDVEQGGLMFIIEEVTGSVIRPNDDLPQWICPSCLAAARTALSFKRRFEKSLKSLQLKKQNETTALDAFVNEEEEDIFKSEENEKEDDGLDRPYKCSHCPKTFNQKVTLDRHTSIHTGDRPFKCPHCSKTFIQKYNLVRHIRVHTGERPFDCSHCSKTFTDKNSLNQHLRTHADQRPYKCSHCLKTFKQKVSLETHLRIHTGERPFSCSHCSKTFKQQSSLKVHLLVHTGERPFECTHCSKSFAKKYSLEEHTRIHTGEQPFKCSHCSKTFTQYSSLKVHLRIHTGERPYECSHCSKSFTQNGNLQEHLRTHHSAEKPKVKRSQSSHKCSQCLKTFGLRADLKRHIRTHTGERPFECSHCSKTFTEKGSLKQHLLTHTGERPFECSHCSKSFSRKSSLKEHIRSHTKEQPFECSHCSKTFTQRSSLNVHLLIHTGERRFKCSYCSKTFYQSSSLKGHLLTHTGERPFECQHCSKTFAQRGSLKYHLSTHNKKQSQK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00917361;
90% Identity: -
80% Identity: -