Lcol019452.1
Basic Information
- Insect
- Lordiphosa collinella
- Gene Symbol
- Zfa
- Assembly
- GCA_018904265.1
- Location
- JAEIFV010000771.1:23745-25949[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.00039 0.019 15.6 0.3 1 23 11 33 11 33 0.96 2 16 7.6e-06 0.00037 21.0 2.0 1 23 39 61 39 61 0.99 3 16 5.8e-07 2.9e-05 24.5 3.8 1 23 80 102 80 102 0.97 4 16 0.00053 0.026 15.2 0.4 1 23 108 130 108 130 0.93 5 16 1.1e-06 5.6e-05 23.6 1.6 1 23 136 158 136 158 0.99 6 16 2.7e-06 0.00013 22.4 2.9 1 23 164 186 164 186 0.98 7 16 1.1e-06 5.4e-05 23.6 0.4 1 23 220 242 220 242 0.97 8 16 1.4e-07 7e-06 26.4 0.2 3 23 326 346 325 346 0.97 9 16 3.9e-05 0.0019 18.8 0.7 1 23 352 374 352 374 0.95 10 16 1.3e-06 6.2e-05 23.5 2.3 1 23 380 402 380 402 0.99 11 16 1.3e-05 0.00065 20.2 3.0 1 23 408 430 408 430 0.98 12 16 0.00084 0.041 14.6 0.6 1 23 451 473 451 473 0.98 13 16 2.4e-06 0.00012 22.6 0.4 2 23 507 528 506 528 0.96 14 16 6.1e-06 0.0003 21.3 0.5 3 23 615 635 614 635 0.97 15 16 5.3e-06 0.00026 21.5 1.9 1 23 641 663 641 663 0.98 16 16 0.012 0.59 10.9 5.6 1 23 669 692 669 692 0.94
Sequence Information
- Coding Sequence
- ATGCCCTCCTCGGAAAAGCTGCATAAATCCCATTTTTGTCCGATTTGCGGCAATGGATTCAGTTGGAAAAGCGACGTAGCAAGACATATGCGTATTCACACTGGAGAACGACCCTACAAATGCACCGAATGCCCACGGGACTTTAACCAACCCTTTCATCTTAAAGTTCATTTGCTTAGACATAAGACTATGCGGTCGAAGCAGGAAGCAATTGTTATAAAGAAAGCTCGAAAACGGCACTATTGCCCTACTTGCGATAAGAGTTTCTCGTTTAAACGTAGTCTAACGCGTCATATACGCATACACACGGGAGAACGTCCCCACGAGTGCAATGTCTGCTCAAAGGCGTACATTGATCAAACCAGTCTTATACGTCATTCCGTTATTCACACTGGTGAGCGTCCCTTCAAATGTCCCAAGTGTCCGCGAGACTATAAACAGGCTGCTCATCTGAAAATACACATGCGTAATCATTCAAGCGAGCGATCCTATAAGTGTACCCTCTGCCCAAAAGCTTTCAGGCGAAAGGATTATCTCACTGTTCACTTGCATTCTCATAAAAAGAATACGTTGAAAGAAACAGACGACAGACGACAAGCCGACAAGCCGACGTCTGATGAAGTAACGCACTATCAGTCCAAGAAGATGCGAAAGCAATTTATTTGTCCTACATGCGGTAAGGTCTTTAACAAAGGATTTAACCTAAGGCGTCATATGCTGATTCATACCGCTGAACCGCAACAAGACAAAGAGCAGATTTTAAAGTCTCAACAGTTAGAGGAAGAAGCAGATCCTAATGAATCTATTTTACCCACATGCGATGAGCCCTTTACCACTGGATTTAAGCTTCTTCAAACCGATGAATCGCAACAAGAAAAAGAGCTGATTTTGGAGTCTCAACAAATAAAGGAAGAAATCTCTACGACTGAGGAAGCTGAACAGAATGACTCTCAGGAGATGCCAAAACAACGGATTTGTCCTACATGCGGCAAGTCCTTTGCCACTGCATTTAACCTTAATCGTCATATGCTTATTCATTCTGGGGAACGACCCTTCAAATGCAATGTGTGCTCAAAAGCGTTCATTGATCAAAGCTATCTAATAACCCATTCCTTTGTTCACACTGGTGAGCGTCCCTTCAAATGTACCAAGTGTCCACGAGACTATAAACAGGCTGCTCATCTGAACATTCACATGCGAACTCATTCAAACGAGCGATCCTACAAGTGTACCCTCTGCCCAAGAGCATTCAAGCGAAAGGATTGTCTCTCAACTCACTTGCGGGCTCATAAACGCAAAACTTTAAAATCTCAGAAAATCGCCACAGACAACAAAAAAGAATCAAAATCCCACAGTTGTCCCATTTGTCAAGTAGACTTTAAACTGCGTTTAGATCTGATGGTTCACTTGCGCACACACAGAAGCAAGCAGCCCGCGCATCCTTTAGATGAGTCAGACGACAAGCCGACGCCTGATGAATTAGTTAAATATGACTCCAAAGATATGCCAAACCATCTTATTTGTCCTACCTGCGGCAAGTCCTTTAACAAAGGATTTAACCTAAGGCGCCATATGCTTATTCATGCCGGTGAACCGCAACACGAAAAAGAGCAGATTTTAGAGTCTCAACAATTCAAGGAAGAAACCACGACGCTTGACGAAGCTGAACCTAATGATTTTCAGATTTTAGAGTCGCAACAATCCAAGGAAGAGAACCCGACGCTTTGCGAATCTGAACATAATGACTTTGAAATCTTAGAGTCTCAACAATTCGAGGAAGAAACCTCAACGCCTGACAAAACAGAATACAATGATTCTAAGGATATGCCAAAACAACGGATTTGTCCTACATGCAGTAAGGTCTTTACCACTGGATTTAACCTAAGGCGTCATATGCTTATTCACTCTGGGGAGCGTCCTTTCAAGTGCACTAAATGTCCGAAAGCCTTTAATCAGCGACAATACCTCAAAGAACATATGGAAAATCATTTAAACAGAGAATTATATAAATGTACTCACTGCGAAAAGAGTTTTTCCTCCCATCGCGGTCAGCGGATTCACTTCTTACGTATTCATGAGTCTGAGAGTGCCACATTAAACGATAATCCTCAGTTAATGGAAGAGTTATGGTCAGACGTCGATATAAAAATAGAACCGACCAGTATTGAAGGAGAGTACAACAAAGAAGTGGAAGAATCAATGTAA
- Protein Sequence
- MPSSEKLHKSHFCPICGNGFSWKSDVARHMRIHTGERPYKCTECPRDFNQPFHLKVHLLRHKTMRSKQEAIVIKKARKRHYCPTCDKSFSFKRSLTRHIRIHTGERPHECNVCSKAYIDQTSLIRHSVIHTGERPFKCPKCPRDYKQAAHLKIHMRNHSSERSYKCTLCPKAFRRKDYLTVHLHSHKKNTLKETDDRRQADKPTSDEVTHYQSKKMRKQFICPTCGKVFNKGFNLRRHMLIHTAEPQQDKEQILKSQQLEEEADPNESILPTCDEPFTTGFKLLQTDESQQEKELILESQQIKEEISTTEEAEQNDSQEMPKQRICPTCGKSFATAFNLNRHMLIHSGERPFKCNVCSKAFIDQSYLITHSFVHTGERPFKCTKCPRDYKQAAHLNIHMRTHSNERSYKCTLCPRAFKRKDCLSTHLRAHKRKTLKSQKIATDNKKESKSHSCPICQVDFKLRLDLMVHLRTHRSKQPAHPLDESDDKPTPDELVKYDSKDMPNHLICPTCGKSFNKGFNLRRHMLIHAGEPQHEKEQILESQQFKEETTTLDEAEPNDFQILESQQSKEENPTLCESEHNDFEILESQQFEEETSTPDKTEYNDSKDMPKQRICPTCSKVFTTGFNLRRHMLIHSGERPFKCTKCPKAFNQRQYLKEHMENHLNRELYKCTHCEKSFSSHRGQRIHFLRIHESESATLNDNPQLMEELWSDVDIKIEPTSIEGEYNKEVEESM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -