Lcol013618.1
Basic Information
- Insect
- Lordiphosa collinella
- Gene Symbol
- -
- Assembly
- GCA_018904265.1
- Location
- JAEIFV010000365.1:10941-11529[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.4e-08 0.00017 21.4 0.1 22 45 30 54 29 54 0.91
Sequence Information
- Coding Sequence
- ATGATGACAGCACAGCAGACGGCATACTGCACCATGCACAGAACACCCACGCCCAGAAAAACAACGATGGGACCGCTGCCTTGGCGGGCCCCGCATTTATATGGAGTGAACAATCGCACGCTCTGGTTGGAGTACAAGAAGCGCGGTTATCCCGTGTCGAGGCCTAGCATAAAGGCGCGTGTGGTGGTCAAACAGGAGCCCACCTTCTCACCCTCGCCCACACCATCCAGCCAGCCGCGACACAACACCAACGAGACTCTCAATATGGTGATGCCGCCACAGGCGAGACGCCAACGCCTTCGCTTGTGCACGCCCACGCCCACGCTAGCCTGGGCAGCGTGGGGCACACTGCCCGCTGGCGCGTGTTCCCGGCAGCGCTATATCGATGCCACAGGCGCCGGAGCCGGGGCCGCTGGCAACGTGAATCCGGCCGCTGCAATGAATCTACAGAGTATTAACTTTAACTCAATATAG
- Protein Sequence
- MMTAQQTAYCTMHRTPTPRKTTMGPLPWRAPHLYGVNNRTLWLEYKKRGYPVSRPSIKARVVVKQEPTFSPSPTPSSQPRHNTNETLNMVMPPQARRQRLRLCTPTPTLAWAAWGTLPAGACSRQRYIDATGAGAGAAGNVNPAAAMNLQSINFNSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -