Lcol012348.1
Basic Information
- Insect
- Lordiphosa collinella
- Gene Symbol
- fru
- Assembly
- GCA_018904265.1
- Location
- JAEIFV010000478.1:195861-197834[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.7e-12 1.1e-08 34.9 0.1 1 44 368 411 368 412 0.91 2 2 9 2.1e+04 -5.0 1.3 4 15 508 519 508 521 0.72
Sequence Information
- Coding Sequence
- ATGGGTGGTGGGCCCACGCCCGTGGCCAGCACGGAGGGTCAAACGTATTGCCTGCGCTGGAATAATCATCAGACGAATCTGGTGCAGATTCTACACGCTTTGCACGAGGTGGGCAGCTATGTGGACTGTACTTTGGTGGTGGACGATGAACAGTTCAAGGCACATCGTGTGGTGTTGGCCGCCAATTCGCCATATTTCCAGCATATACTGCAGGATGTGCAACAGGATCAGTGTAGCATAATACTGCCGGGTGTCAAGGGATTTGAGATAGCTGCACTGTTGCAGTACATGTACACGGGAGAGACGACGGTGACCAAGAGTCAGGAGCCAGAGATTTTACGCACAGCCAAGGAGCTGCAGGTGAAGGGTCTGTATGATAATCTGATGAAGTTTAACCACAACAGCTTGGCTCCCACCTCCAGTACGGTGACACACAAGCCACAGAATGGCAACTCGTCTTCAGTGATCTCCACCTCGACGCATATATCACCCAGTGCGGCCATTTCGAGCAGCTGCTCGCCTCCACCCACTAATTTTGCAGCCTATCAGCCGCCCTATACGAACTATGGAGCAGGTCCAGCGGCCTTAAATGCACCACATCCAACACACATACCTGCGGGTGAAGCTCCTCTTACACCCACACATGCTCCTACACATGCAGCTCCTGGTGAGGCGGGTGGTCAGTGGCCTCTATCACCCTCAGCCGCTGCTGCAGCCATGTTAAACTCGGTTTATGAGTCTGCCGCCGACATGAATCCTCTTAAGCGCAAGAAACTCTCAGCCATTTCCAGCATGTTATTGAATAGCACCCGAGATACGCCCATTTTACGTAATGTGCTGGCCCAGGCCAATCCCCCAGACTCCAGTCAGACCAATCCTTTGTTAATGAAGAGCAGCTCCTCGTCTTCGCTGGTGGAGACAAAGACACCCTCGCATCAGCATCAACTGCAGAGCGGTTCCGGTACGGGCAGTCACAGCTTCAATGGTTCCGACTATGGTGGCGATAAGGAGCCTCTGTCTCCACACACGGATCGTTCGTTTGACGAGGAAACTGGTGGTCCTGGTGGCAAGAAACCCGAATGGAAGCGTTACAAGCAATACACCCGAGCGGACATGATGTGTGCCATTCAAGCGGTACGTGAGGGCATGAGCGCTCTTCAGGCCAGTCGCAAGTATGGACTACCCAGTCGTACGCTGTATGATAAGGTGCGCAAGCTGAACATCACCACGGGACGTGGTACCCACCGCACGCCCAAGCGTAGTCCACCGGGAGTGGAGTCCTCTGCGGCCTTTCCCTATGCGGCAGCGGCTGCACACAACTATGCCCAGGGTCAGGCACAGAATGAGCTGATGGAGCGAGGAGGTGGTGGTGGTGGTGAGTCCAAGGAGCTTGCCCCACATCATGGCATGCCACCCACCATACCACACTCGGCGGCTGCGCTGCTAGATCATGCCTTCCTCCAGCAGGCTTTGGAGAATCGAGGCGGTGATATGGCAGGACGTGAGGCTTTGCATGCCATGGCCTTGGCAGCAGCCGCTCATGCTGCAGCCAATCGTATGTCTAGCAGTCCCACCGAATCCGGCTCCAATGGCCATCATCAGCAGCATCATCATCAGCAGCTGCATCATGGCGTACATTCACCCAGTCCCCGGCATTATGCCGACGAGCGTTTGATCAAACGCGAGCGAGATCAAGATGAACGTGAAGATGCCGACGATGAGGAGGATCATGATCATGTGGAGGATCTGTCGCTGGCCAGAAAAGAGCGTCCCGAGTCACCCTATTCACCGCCACCGCCACGCGCCTCTTCGCCTTTAGAGAGTGCCAGTGTCATTATGCACTCCTCCACCAACTCGACCAATGGCAAAGACTTGGACGACTATCCCGCTTCGCCCGCAGGCCTCAAGCGAGAGCAGGCTTACACCGACTGA
- Protein Sequence
- MGGGPTPVASTEGQTYCLRWNNHQTNLVQILHALHEVGSYVDCTLVVDDEQFKAHRVVLAANSPYFQHILQDVQQDQCSIILPGVKGFEIAALLQYMYTGETTVTKSQEPEILRTAKELQVKGLYDNLMKFNHNSLAPTSSTVTHKPQNGNSSSVISTSTHISPSAAISSSCSPPPTNFAAYQPPYTNYGAGPAALNAPHPTHIPAGEAPLTPTHAPTHAAPGEAGGQWPLSPSAAAAAMLNSVYESAADMNPLKRKKLSAISSMLLNSTRDTPILRNVLAQANPPDSSQTNPLLMKSSSSSSLVETKTPSHQHQLQSGSGTGSHSFNGSDYGGDKEPLSPHTDRSFDEETGGPGGKKPEWKRYKQYTRADMMCAIQAVREGMSALQASRKYGLPSRTLYDKVRKLNITTGRGTHRTPKRSPPGVESSAAFPYAAAAAHNYAQGQAQNELMERGGGGGGESKELAPHHGMPPTIPHSAAALLDHAFLQQALENRGGDMAGREALHAMALAAAAHAAANRMSSSPTESGSNGHHQQHHHQQLHHGVHSPSPRHYADERLIKRERDQDEREDADDEEDHDHVEDLSLARKERPESPYSPPPPRASSPLESASVIMHSSTNSTNGKDLDDYPASPAGLKREQAYTD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00916318;
- 90% Identity
- iTF_00916318;
- 80% Identity
- iTF_00916318;