Lcol018613.1
Basic Information
- Insect
- Lordiphosa collinella
- Gene Symbol
- bab2
- Assembly
- GCA_018904265.1
- Location
- JAEIFV010000911.1:38904-44445[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.4e-17 3.3e-14 52.5 0.0 1 43 61 104 61 106 0.95
Sequence Information
- Coding Sequence
- ATGATTGAAAGCGGCGGACATGGCTGGATGGGCGCTGCTGCGGCGGCAACAGGCACATCTGTGGCGGCAGACAGCTATCAATATCAGTTGCAGTCCATGTGGCAGAAATGCTGGAACACCAACCAACAGAATCTGGTGCAACAGTTGCGCTTTCGTGAACGCGGCCCGCTAAAGTCCTGGCGTCCGGAAGCCATGGCCGAGGCCATTTTCAGTGTGCTCAAGGAGGGACTGTCGCTGTCGCAGGCTGCCCGCAAATTTGATATACCCTATCCGACATTTGTGCTCTATGCGAATCGTGTGCACAATATGTTGGGACCATCGCTGGATGGTGGCGCTGATCCAAGGCCCAAGGCACGCGGTAGGCCACAACGTATACTGCTGGGCATGTGGCCCGAAGAGTTGATACGCAGCGTGATCAAGGCGGTTGTATTTCGGGATTATCGTGAGATCAAAGAGGATATGGGAGCGCATCAGTATGCCAATGGACAGGCGCATGGTTCTTATATTGGTGGTGGCTCTAATTCGGCAGCTGCTGCCAATGGCTATCACAATGCTGCAGCCAAAATGGCTGCACAAAATGCTGCTTTGGCTCCGCCAGATTCGGGTAGCCCCTTGAGCTCCATGACCGAGTCCCTGCGTCGTCAGATACTGTCACAGCAGCAGCAACAGTCACCACATGGCCAGTCCATGAACATGTACAAGTCGCCAGCCTATTTACAACGTTCAGAAATCGAGGATCAGGTATCGGCGGCAGCAGCTGTGGCGGCGGCCAAACATCAGCAGGGCGAGCGACGCGGTTCGGAGAATTTGCCCGATCTAAGCGCCTTGGGTTTGATGGGTTTGCCGGGTTTGAATGTGATGCCCACACAGCCGGGACATCAGCGAAGCGGTGCTGGTGCACCGGCCACTGGTGCGGCAGTGCATCCCAGTGCGGCCAGCTATGCGCGTGAGTTGTCCAGGGAGCGTGAAATGTCCCGTGATCGTGAACTGAAAGAGGCTATGCAGGCACGTCAATATGGTAATCAGTCACGTGGCTCCAACTCATCGGTGGGGGGAGGTGGTGGCAGCAAAGCGGTGGGAGCGAGTCGGCCGGGAGCCGCCTCACCCTACTCCTCGCACTATGCCAACACTAAGCATGCCAAGGAGCATCCGAATTATGCGTATAATAAACGATTTTTGGAAAGTTTGCCCGCGGGCATAGATTTCGAGGCGATTGCCAATGGTTTGTTGCAAAAGTCGGTGAACAAAAGTCCGCGCTTTGAGGACTTTTTCCCGGGGCAGGATATGAGTGAATTGTTTGCCAATTCGGATGCAGGGGCAGCGGCGGCGGCGGCAGCAGCAGCTGCGGCTTATGCACCAGCGGGTGTAAGAGAATCGCCACTAATGAAGATCAAATTGGAGCAGCAACAGACCACCGAGCTGCCGCATGAGGATTAA
- Protein Sequence
- MIESGGHGWMGAAAAATGTSVAADSYQYQLQSMWQKCWNTNQQNLVQQLRFRERGPLKSWRPEAMAEAIFSVLKEGLSLSQAARKFDIPYPTFVLYANRVHNMLGPSLDGGADPRPKARGRPQRILLGMWPEELIRSVIKAVVFRDYREIKEDMGAHQYANGQAHGSYIGGGSNSAAAANGYHNAAAKMAAQNAALAPPDSGSPLSSMTESLRRQILSQQQQQSPHGQSMNMYKSPAYLQRSEIEDQVSAAAAVAAAKHQQGERRGSENLPDLSALGLMGLPGLNVMPTQPGHQRSGAGAPATGAAVHPSAASYARELSREREMSRDRELKEAMQARQYGNQSRGSNSSVGGGGGSKAVGASRPGAASPYSSHYANTKHAKEHPNYAYNKRFLESLPAGIDFEAIANGLLQKSVNKSPRFEDFFPGQDMSELFANSDAGAAAAAAAAAAAYAPAGVRESPLMKIKLEQQQTTELPHED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01549501;
- 90% Identity
- iTF_00914429;
- 80% Identity
- -