Lcol012765.1
Basic Information
- Insect
- Lordiphosa collinella
- Gene Symbol
- bab1
- Assembly
- GCA_018904265.1
- Location
- JAEIFV010000063.1:129085-130648[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.6e-18 2e-14 53.2 0.0 1 43 55 98 55 100 0.95 2 2 6.4 1.5e+04 -4.0 0.9 6 13 213 220 211 222 0.83
Sequence Information
- Coding Sequence
- ATGATGGAGAACTCGCACGCTTGGATGGGCGCCACCGGCTCCACACTAGCAGCAGACAGCTATCAGTATCAATTGCAGTCCATGTGGCAAAAGTGCTGGAACACGAATCAAAATCTCATGCATCACATGCGCTTCCGGGAGCGTGGACCATTGAAATCCTGGCGACCCGAGACCATGGCCGAGGCCATTTTCAGTGTGCTCAAAGAGGGACTCTCGCTGTCGCAGGCCGCCCGGAAGTATGACATACCGTATCCCACCTTTGTGCTCTATGCGAATCGTGTGCACAATATGCTGGGACCATCGATCGATGGTGGACCCGATCTGCGGCCCAAGGGACGCGGACGACCGCAGCGCATCTTGCTGGGCATCTGGCCGGATGAGCATATCAAGGGTGTGATCAAGACGGTGGTGTTTCGCGATGCCAAGGACATGACGATGAAGGACGACAGTCTGGGGTCACATATGCCGCCCTATGGGCGTCATTCGCCCGTGTTTCCCTTGCAGGACATGACGCTAGGCTATCCAGGCGCTAGTGGCGGCGGCATGCCGGGCAGCTCCTTGGCCTGTCCCAATGGCGGTCCAGTTGGGGGCCCAGCTGGAGGTGGTGTGGAGCAGCAGCCCATGTCACAGGAGACGGCGGCCGCGGTGGCCGCTGTGGCGCACAACATACGCCAGCAGATGCAAATGGCTGCCGCCGTGCAGCATCAGCACGGGGAGGCGGGGCCGCCTCCAGGACTGTTCAATTTACCGCCACACTTGGCAGCCGGTCCGGGGGGCAGGGGGAGTATATCGCCAGCGTTGAGCAGTGGCTCTGGTCCTAGGCATGCTCCCTCGCCATGCGGTCCCGCCGGCCTCATGCCGAATCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTCTTGCCGCCGCACAAGTCCGGTTTCGGTGCCAGTTCCATGCCTACGGCTGCCAGTGCCGCCTCCTCCTCCTCCCAGCAGCAGCAGCACCAGGATAAGTCCAAGCCCAAGTGTAGTCCTTTAAGAAGCGAAACGCCACATTTGCATTCTCCTTTAGCGGATCTGGGTCTAGAGATGAGCAGCTATAAAAGAGATTACTCACCCTCGCGTCTCTTTGCCGAGGATCTGGCTGAGCTTGTGGGAGCCAGTGTGTCTTCCTCCTCCTCGGCCACCACCACGGTAACCACAGCAGCTGCTGCAGCCACTGGCACTGCCACCGACATCAGTTCCAGCAGCAGCAGCACTGGCATCAAGGTGGAACCCATTACCACCACTAGCGAGTAG
- Protein Sequence
- MMENSHAWMGATGSTLAADSYQYQLQSMWQKCWNTNQNLMHHMRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSIDGGPDLRPKGRGRPQRILLGIWPDEHIKGVIKTVVFRDAKDMTMKDDSLGSHMPPYGRHSPVFPLQDMTLGYPGASGGGMPGSSLACPNGGPVGGPAGGGVEQQPMSQETAAAVAAVAHNIRQQMQMAAAVQHQHGEAGPPPGLFNLPPHLAAGPGGRGSISPALSSGSGPRHAPSPCGPAGLMPNLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLPPHKSGFGASSMPTAASAASSSSQQQQHQDKSKPKCSPLRSETPHLHSPLADLGLEMSSYKRDYSPSRLFAEDLAELVGASVSSSSSATTTVTTAAAAATGTATDISSSSSSTGIKVEPITTTSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00914428;
- 90% Identity
- -
- 80% Identity
- -