Lcol015881.1
Basic Information
- Insect
- Lordiphosa collinella
- Gene Symbol
- lov
- Assembly
- GCA_018904265.1
- Location
- JAEIFV010000705.1:110392-126305[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8.7e-19 2.1e-15 56.4 0.0 1 44 746 789 746 790 0.96
Sequence Information
- Coding Sequence
- ATGTTAAAGGACGTCGAGGAGGAGTTGATTAAACGCCGCAAACTGACGTCGCTTCAGATGAACGACTACGGCCACCAGGTGGCGTCACAGTCGCTGCCCTTGCCGTTGCCGTTGCTGGCTAAGACGACGGTCAGTGATCATGCCGCCTCCATGCATACCACACCGCCCACCACACCGCCCACGCCGCCACCCATGCCCTTAAACATGACGGCCTCCAGCACGCACAGTCCACCTGCCACGCCCACAGCTGCCGCAGCGCCTCCTGCACCCCAGGATCATTACAGCCTGCGTTGGAACAATCATCAGAATCACATACTACGAGCTTTCGATGCTTTACTGCAGACCAAAACCCTGGTGGACGTGACCCTAGTGTGTGCCGAGACCTCGATACGCGCCCACAAGATGGTTCTATCCGCCTGTTCGCCCTTCTTTCAGCGCGTGTTCGCCGAGACTCCGTGCAAGCATCCGGTTATTGTGCTCAAGGACTTTCGTGGCTGGGTGGTGCAGGCTATTGTGGACTTTATGTACCGCGGGGAGATCAGTGTGCCACAGCAGCGTCTGCAGACCTTGATACAGGCCGGCGAGTCGCTGCAGGTGCGCGGATTGGTGGAGAGCTCGGTGCCGGAGCACACTCCCACTCCGGCGGCCTCTCCCGATGATTTCGGTCTTATCGATGCTTCGCTAATGTCCTCCAGCTTTGAGGACGAGTCACCCTCCATGGTGAGGCCAGCCAGTGGCAAGCTTATCATGCCCTCCAGACTGTTTGGTAATCCAGCCAGTGCCATGGCTGCGCTGAGTTTGCGAAGAAAGCGAGAGCAGGAGTGCAGCGAGCGTGAGCTGGAGAGTGATCAGGAGTTGGGCGGCAGCTCACCCATGCCGCGACGCAAGCAGGCGCGTCCCCGAAGACGTTCCGGTGAGGTTCCCCATGACTTTGGCTTGAGCAAACCCGAAACGGAAACGCTACAAACTGTGATCAAGCATGAGCTAATGGAGCGCATGGACAGAGAAACGGAAGAGCCACAACAAGAGGAGCAGGAGGACCAACAAGGTCAGGCTAAGAAGGACAAACAGGAGGAGGAGGAGAAGGCCAGCCCAGAGGAAGAGGTGGGCCAACAGACGCAACATACGCAACAAGAGCTTGACGAGGACGAGGAGGAGGAAGAGGCCGAGGAGGATCCTGACGAGGAGGAGCAGGACATTGAAGAGCTTATACACACCACCAACGAGTTGAGGCGCCAGGCGGCAGTGGCGGCAGCCAATGCGGCCGCCATGTCGCCCTCCCCCTGCTCACCCTGTCCTAGCGATGGGCCCGAGGATCTGTGTACCACCAAGAAGGACAAAGATGGCAACACCCAATCCTCGGACAGCGAGAGCAACAACAACAACAATAACAACAGCAGTAAACTCCAGGACAACAATCAACGCATCATGTTATCCCTGAAGGACATACGACAGTTGAATGCCAAGCCAAATGCCTCCTCCACGCCCAATCATCACACACCCACCAGTTGCTCCGGAGGAGGAGGAGGTTTCCCCCCACCTGGCATGGGCCGTCCGCCTGGTCTACCCGATAGTCCACCCACCTGCCACATGGAAGCTTTGGAGGCTCAAATGCATGCAGCAGCTGCCGCTGCTGTGGCGGCAGCCGGTGAGCACTCCTTCCATCATATGGAGCATCAGATGGAAATGTCCCTGGCCGCGGCTGCTGCGGCAGCTGTAATGCGTGACCCACGCGACCAGAGGGAACACAACGCTTACGCCAACAATCTGCTGGGACCCATGGGTATGCCTCCCTTTGGACCAGGACCGGGACCCAATGGCGGTGGAGGCGGTGGATCCACAGGTGGTAACGGAGGACCCTCACACCATGAACGCCTCGAGGACAGCATGAATCGCTTGAGCAAAGAGTTTGTCAAGGAATTCGGACCCACATCGCCAATGAGTCTGCCCGGACACTTCAATCCGCCACCGGATGGCCAACCACATCCGCCATCACCGCTGCCCTTTCCCGGTATGTCCTCGGCGTTGACGCTAACGCCGCCACACATGTTCGGCTTGGACTCACCACTGGGACTCTTTCCGCCGGGCATCGATCCTGGCAAACTCTACAATCCACTCATGGAAATGAGCGATCCACGCGATATGCCAGGAGGACCACCGCCGTTTCTCAAAAAGAAAATGCCACGCCCCAAGGGACAGCATTCGGCGCCACGTGGTGGTCCACCCCGCTCCTGGACCAATACCGAACTGACGGAGGCCCTGCAGCATGTGTGGAACAAAAAGATGACCACCTCGCAGGCCTCTCGCATCTTTGGCATTCCCTACAATTCGCTGCTGATGTATGTGCGGGGCAAATATGGCAAGAGTCTTAAGCTGGAACAGTTGCGCAAGGATTGCATCAGTGGACCACCCATAGAGATGCTTCAGATGGGCATTAGTGGCGGAAATGGCGGCAGCGGTGGTGGCAGCGGCTCCAGCAAGGGAGAGAAGAACAAAGAGCGTAAGGAGAAGGACAAGGACAAGGGATCGAGTGGTGGTGGCTCCCATAACAACTCGGGTGGCTCCAATAATACGGGTCCTTCAGGTGGTTCATCTGGAAATGGCCCGCATATGCCACATCCCAGTGAGCTGGGTCCCTTGGGGCCTTTGGACTTGGAGCTGGGACTGCCCTTGGGTCCCCCCGGTGGACCCAGAAGTGGCAGCTCCGAGCCTGATCTGCTAGGAGGACCCAATCCCCTGTTCAATCCCTTCAATCCGCAAGGCTTCTATCCGGACTTTGCGGGTGGTTTTCCTGGCCTACCGCTGAGCATGTTGAATCTGTTGCCGCCCTCCGAACGACATCATGCGGCCGCGGCTATGCATCATTTGGGCATGACCATGGATGAGGACTGCAAGTCGGTGGGCTCCAAGCAATCCTCCTCGTTGGATGATGACTTTGCGGCACCGCCCGGCTTGCCGCCACACTCCCGTGGAGAGAGTGGACCACCGCTGACGCAGGCGAATGGCGGCGGGGCTGGGCAGGATTGA
- Protein Sequence
- MLKDVEEELIKRRKLTSLQMNDYGHQVASQSLPLPLPLLAKTTVSDHAASMHTTPPTTPPTPPPMPLNMTASSTHSPPATPTAAAAPPAPQDHYSLRWNNHQNHILRAFDALLQTKTLVDVTLVCAETSIRAHKMVLSACSPFFQRVFAETPCKHPVIVLKDFRGWVVQAIVDFMYRGEISVPQQRLQTLIQAGESLQVRGLVESSVPEHTPTPAASPDDFGLIDASLMSSSFEDESPSMVRPASGKLIMPSRLFGNPASAMAALSLRRKREQECSERELESDQELGGSSPMPRRKQARPRRRSGEVPHDFGLSKPETETLQTVIKHELMERMDRETEEPQQEEQEDQQGQAKKDKQEEEEKASPEEEVGQQTQHTQQELDEDEEEEEAEEDPDEEEQDIEELIHTTNELRRQAAVAAANAAAMSPSPCSPCPSDGPEDLCTTKKDKDGNTQSSDSESNNNNNNNSSKLQDNNQRIMLSLKDIRQLNAKPNASSTPNHHTPTSCSGGGGGFPPPGMGRPPGLPDSPPTCHMEALEAQMHAAAAAAVAAAGEHSFHHMEHQMEMSLAAAAAAAVMRDPRDQREHNAYANNLLGPMGMPPFGPGPGPNGGGGGGSTGGNGGPSHHERLEDSMNRLSKEFVKEFGPTSPMSLPGHFNPPPDGQPHPPSPLPFPGMSSALTLTPPHMFGLDSPLGLFPPGIDPGKLYNPLMEMSDPRDMPGGPPPFLKKKMPRPKGQHSAPRGGPPRSWTNTELTEALQHVWNKKMTTSQASRIFGIPYNSLLMYVRGKYGKSLKLEQLRKDCISGPPIEMLQMGISGGNGGSGGGSGSSKGEKNKERKEKDKDKGSSGGGSHNNSGGSNNTGPSGGSSGNGPHMPHPSELGPLGPLDLELGLPLGPPGGPRSGSSEPDLLGGPNPLFNPFNPQGFYPDFAGGFPGLPLSMLNLLPPSERHHAAAAMHHLGMTMDEDCKSVGSKQSSSLDDDFAAPPGLPPHSRGESGPPLTQANGGGAGQD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00918974;
- 90% Identity
- iTF_00918974;
- 80% Identity
- iTF_00916323;