Lcol006157.1
Basic Information
- Insect
- Lordiphosa collinella
- Gene Symbol
- ttk
- Assembly
- GCA_018904265.1
- Location
- JAEIFV010000837.1:115991-127116[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.5e-19 1.1e-15 57.3 0.0 2 45 570 614 569 614 0.97
Sequence Information
- Coding Sequence
- ATGTCTGTGCAGCAGTTCTGCCTGCGCTGGAACAATCACCAGCCGAACTTTATATCGGTGTGCTCCTCGCTGCTGCACAATGGCACCCTGGTGGATGTTACGCTCGCGGCGGAGGGCCGCCAGCTGCAGGCCCATAAAATTGTGCTCTCCGCCTGCAGTTCCTACTTTCAGGCTCTGTTCACCACGAATCCTTGCCAGCATCCGATTGTCATACTGAAGGACGTGCAGTACGATGATCTCAAGACCATGGTGGACTTTATGTACTATGGTGAGGTGAATGTGTCGCAGGAGCAACTGCCGCACATACTTAAGACGGCCGAGATGCTCAAGATCAAGGGTCTGGCCGAGATGCCGACGGATCCGGCAAATCTCACCAAATCGGACAGTAAGTCCTCCACTGATGGAACTGAACTTGTTGGCGGCTCCAATGTAGCCGGTTCCGCAACCGGTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCACTCCGTCGCCGCTGAGTGCTGGCACGTCGCCGGCCACGCGGCGTAAGAGATTACGCAAATCCTCGAATAACGGCTCTGGCGACCGCAACAACTCAGATGAGCAGCACAATAGCTCTTTGGATGCTGGAGCAGCGGGCAGTGCCGCTGGCAGCGCAGCTGGTCTCAGTCTGGCCCAAATGAGCCAAATGTCATTTGGTGCCGGTGCCAATACAGCGGCTGCCTTGGGTAGCCTCACGGCTCATTCCCTGCACGCGGCTAAGCTGCTAAAGGAGTCTGCAAACAACGAACTGGAACCACAGCCCCAGGATTCGGATCTGGATGATGGACACGGACACATACACATGCAAATTAAACCCGAGGTGGATATTGGGGGAGTAAATCAATCAATGCCCCTGGATATTTCGGGCGCCACCACACCATCGGAACATGATGCGCCAAATTCGCAATCGTCGCATTCGGGTCTGCAATGGACAGTTGTCGATTCAAACTATCCGCGCTTTTCCCTGCCCGCCTGCCAGTCCAACTTGCTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATACTCGTCGCAGATCATAACCGTGAACAATCTAGTCAGCGGGTATGCGACGGCAGCCCAGAACCTCTCGCCCACTTCACCCAATGAGTCCAATATGGTGCAATCGGTTTACAGCCAGGGTCCGACGCCCACACAATCGCCAGTGCATTCGGGTGCTGGCAGCGGCGGCGGTGCTGCAGGAAACAGCGGCAGTGCCGGTGTAGCCGCTGGCCAAGTGGTGAAACGAAAGCGTTCAGTGAACCCGCAGGGGGATGAGAATTTTATTCGCGCCCTGGAGGCGGTGCGTACGGGAGGCATTGGATTTTGCAAGGCAGCCCGACTGTATGGAGTGAACAATCGCACGCTCTGGTTGGAGTACAAGAAGCGCGGCTATCCCGTGTCGAGGCCTAGCATAAAGGCGCGTGTGGTCAAACAGGAGCCCAACCTCTCACCCTCGCCCACACCATCCACAAATCCGGGCGATGACAACACCAACGAGACTCTCAATATGCAGATGCCGCCACAGGCGGAGACGCCAACGCCTTCGCTTATGTGCACGCCCCACGCCCACGCTAGCCTGGGCAGCAGTGCGGGCACACTGCCTGGCGCTGGCGGTGCCGGCAACACACATCCGGCCATTGGTGTGATGAGCCTCTTCGATGCCCGTTACATGGACTCACCGGGCAGCGTGCACACCATGTCCCGGCAGCGCTATATCGATGCCACAGGCGCCGGAGCCGGGGCCGCTGGCAATGTGAATCCGGCCGCTGCAATGAATCTACAGAGTATTAACTTTAACTCAATATAG
- Protein Sequence
- MSVQQFCLRWNNHQPNFISVCSSLLHNGTLVDVTLAAEGRQLQAHKIVLSACSSYFQALFTTNPCQHPIVILKDVQYDDLKTMVDFMYYGEVNVSQEQLPHILKTAEMLKIKGLAEMPTDPANLTKSDSKSSTDGTELVGGSNVAGSATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPSPLSAGTSPATRRKRLRKSSNNGSGDRNNSDEQHNSSLDAGAAGSAAGSAAGLSLAQMSQMSFGAGANTAAALGSLTAHSLHAAKLLKESANNELEPQPQDSDLDDGHGHIHMQIKPEVDIGGVNQSMPLDISGATTPSEHDAPNSQSSHSGLQWTVVDSNYPRFSLPACQSNLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSSQIITVNNLVSGYATAAQNLSPTSPNESNMVQSVYSQGPTPTQSPVHSGAGSGGGAAGNSGSAGVAAGQVVKRKRSVNPQGDENFIRALEAVRTGGIGFCKAARLYGVNNRTLWLEYKKRGYPVSRPSIKARVVKQEPNLSPSPTPSTNPGDDNTNETLNMQMPPQAETPTPSLMCTPHAHASLGSSAGTLPGAGGAGNTHPAIGVMSLFDARYMDSPGSVHTMSRQRYIDATGAGAGAAGNVNPAAAMNLQSINFNSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00474427;
- 90% Identity
- iTF_00916311;
- 80% Identity
- iTF_00916311;