Lcol008318.1
Basic Information
- Insect
- Lordiphosa collinella
- Gene Symbol
- -
- Assembly
- GCA_018904265.1
- Location
- JAEIFV010001519.1:14618-16238[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 9.9e-17 2.3e-13 49.8 0.0 2 45 348 391 347 391 0.94 2 3 0.018 43 4.1 0.0 27 37 420 430 416 435 0.89 3 3 1.3e-19 3.2e-16 59.0 0.0 2 41 457 496 456 499 0.95
Sequence Information
- Coding Sequence
- ATGAACAACCTAAAATGGATGGGCCACTCGGCGACGATAATGGACATTCAGCGCTCTCTGCGCGACGACAACGATACCTGCGAGGTTGTCCTGACGGCCAAGGATGGCGTCAGTGTGCGCGCCCATCTCTTTGTGCTGAGCACTTGCAGCGATCTGATGCGAAATCTTTTGGTGGATGTGCCGCCCGGGCAGGAGGCCACCATCATATTGCCCGATATACGCGGCGAGCTGCTGGAAACGATGTTGTCGTTCATTTACATGGGCGAGACGAGCTTGCCCTCGGCCTCGTTGACGGAATTTCTGGAAGCCATCAATCTGTTGGGCATCAAGTCGGCCATTAGCTTCGAGTGTAATCCCACCCCCCCGTTGAACACCTCGAATGTGGACCAAGTGGTGGCTGTGGAAGCGGCCAAGTCCATAAGTGGATTGCAAATTGCCTCAACTGAACTAATGGAGGACGAGGAGGAATCGGCGGCGGGGGGTCATACTCCGGCCACGGAAAACGCGGTAATTTCAAATTCTCAGCCGCAACAGCCGACACCGCCCGGCCGTGCCCTGGAGTTTCTTGACATGTACACTGAACAGCCGAAAATTACATACTCCATTGAGCACATGGGCGGCAACACCAGTGGCAACCAGTACATACTTACCGAAAACACGGGCACTTTCACCATCACCCAATCCGCAGCGGCGCCCTTGTCCAAGCTGGACGCCTCCCATGAGGATATGGCTGAAGATGATGACGCTGAAGCTGATGTCACCGATGAGGTGGAGGAGCAGGAGAACCAACTCATTGAGGAGGAATATGTGTCAGCTGACCCTCTGATCGAAATGCAAACAGATGCCGAAATGGGTGAAGGTGAAAATGATGAGGACGATGATGATGCCGAAGAAGAAATGGAAATGAACATAAAGCCCAGTCTGGTGCATGCCGCCAAAGTAAAAGCCCGTCGTTCGGCCCCTGCCAAGATCCAAGCCAAGCGACAAGCGGCCAAGCAGCTGCACTTTGTGGCGCTCAAGAGCGAGCATAAGGACGGAATCAACGATGCTCTGGAACTGGCCGCCGAAGCTGTGCTCCAGGAAGGCCTCAGTCTGCAAAAGGCCGCCGATCGTTTCGATATATCCAAAACCGTTCTATGGCGTCGCGTGCGCACGAATCCCGAGTATTTGCGTAGCAATCGCGAGAAGCCCTCGCTGTCCGAAGCCTATGAACGTCTGAAGAGTGGTGACTCGCTTAAGAGCATAAGCCAGGATCTGAACATACCCATGTCCACGCTGCACCGTCACAAGGTGCGCCTCGCCGCTCAGGGCCGTTTGCCCGATTTTGTTGCTTGCCGGCGCCGAGATAGCACACCCAAGGATGAGTTGCGCGATAAGCTGGCCAAGGCCGTGCACGCGTGCATCAACGAGGGCATGTCCCAAAATCATGCGGCCAATCTCTTCGAGATACCCAAGAGCACACTATGGCGACACCTGCAGCGTCGTGTGGCCGAAACGGAACGCAAAGTCAAATTGGAGCAGCACGATGGCGAGGAAGAGGATCTGCTTAGCTAG
- Protein Sequence
- MNNLKWMGHSATIMDIQRSLRDDNDTCEVVLTAKDGVSVRAHLFVLSTCSDLMRNLLVDVPPGQEATIILPDIRGELLETMLSFIYMGETSLPSASLTEFLEAINLLGIKSAISFECNPTPPLNTSNVDQVVAVEAAKSISGLQIASTELMEDEEESAAGGHTPATENAVISNSQPQQPTPPGRALEFLDMYTEQPKITYSIEHMGGNTSGNQYILTENTGTFTITQSAAAPLSKLDASHEDMAEDDDAEADVTDEVEEQENQLIEEEYVSADPLIEMQTDAEMGEGENDEDDDDAEEEMEMNIKPSLVHAAKVKARRSAPAKIQAKRQAAKQLHFVALKSEHKDGINDALELAAEAVLQEGLSLQKAADRFDISKTVLWRRVRTNPEYLRSNREKPSLSEAYERLKSGDSLKSISQDLNIPMSTLHRHKVRLAAQGRLPDFVACRRRDSTPKDELRDKLAKAVHACINEGMSQNHAANLFEIPKSTLWRHLQRRVAETERKVKLEQHDGEEEDLLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00917324;
- 90% Identity
- iTF_00915460;
- 80% Identity
- iTF_00916350;