Lcol017064.1
Basic Information
- Insect
- Lordiphosa collinella
- Gene Symbol
- -
- Assembly
- GCA_018904265.1
- Location
- JAEIFV010000150.1:114665-118313[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 6.6e-12 1.6e-08 34.4 0.0 1 40 446 486 446 489 0.90 2 4 3.7e-14 8.6e-11 41.6 0.1 2 39 501 538 500 541 0.94 3 4 8.5e-18 2e-14 53.2 0.0 1 45 555 600 555 600 0.98 4 4 8.6e-20 2e-16 59.6 0.0 1 43 607 650 607 651 0.97
Sequence Information
- Coding Sequence
- ATGCCCAACTTCGGCATGCGCTCGGCTCGTGTGCTTGGTCTGCTACGCACCGCCGAGCAATTGAAAATCAAGGGTCTTTGCGAGACAGCTGAGAATGCGGATGATCTGAATGATGCGGCCACTGCCACGATAACTGTGTCCGAGAACATACAACAGTCTGTTGTGGGCAATATTCCCTCGCTACGCAAGTCGCGGCTCAAGCGCTCCAAGTCGCCAGATCTGCAGCACCAGCACCATCCGCAGACCATACTCATCCAGGGACAAAACCAAACGTCCATTGTGAGTCTGCAGCAGACGGTCGACGGCAATTATATACCAGTCGGCGGCAACGGCGACGACTCGGACGTGGATCAAGAGCACGAGCACGAACATATTGACGAGCACGAGCACGATCACGATCACGATAGTAAGCCGGGGAAGATCTGCAAGACAGAGCACTCGGTGGCCTCACCAGCGTCCAACTCATCCAACGCCTCGAACAATGCAGCGAGCGTGAGCGGCGTGACAGCAGCAGGCCAAGCCATCGTCACACAAATTGTAGTAGCGCGCGACGGAAAAGATACAAAAAATATGACTAGTTTAGGCATGGGCATGAACGGCGGCCTGTTAGGCGTGCCCATGGGATTCCTGGATTTCACACCCGAGCCACCAGCACCATCTGCCACACCAGTCACCGTAACGGAACATGTCGACCTCTCGTGCAATCCGAGTACGGATACGCGAGATTTATCAAATCCCACCGAAGCGCTCGACATTGACAATCATCTGGCGCAACAAATCCATCGGCTGGATCAATCTCCCATGCATTCGATAGGCCATCATCACACTGGCGATGAGAGCAACTCGCAGCTGGTGCAGCACATCAAAAGTGAGGTGATCGAGGCCAAACATTTGGCGGCTGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGGGTCATGTGACGCATGCGGAGATTGGTGGGGCCACGGTCATGGAGATTGATCCGAGTCAAATAAAGCACGAGCCAGGCATGATAATAACGCCAGAGATTGTCAACATGATGTCGTCGGGTCATATGGACATGTACAACTCGGATACGAGCGAGGACTCCATGATGATCGCTAATGGCTCACCGCACGATCAAAAGGAGCCGCACTATACGAATTTGGATCAGCAACACGGTCTGGGTGGCAGCAAAGGTCAGTTTAATGGTCCCAAAGCTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAATCAAAACATGAGCCTGACGAAAGCATCTGCCATTTATGGCATCCCCTCGACCACGCTGTGGCAACGGGCTCACCGTTTGGGCATCGAAACGCCCAAGAAGGAGGGCGGCACCAAATCGTGGAACGAAGATGCATTACAGAATGCTTTGGAGGCATTGCGATCGGGTCAGATATCCGCGAATAAAGCGTCGAAAGCCTTTGGCATACCCTCATCGACGCTATACAAGATAGCGCGTCGGGAGGGCATCCGTTTGGCAGCACCATTTAATGCCGCCCCAACCACGTGGACGCCCGAGGACTTGGAGCGTGCATTGGAGGCGATTCGAGCGGGTAATACGTCTGTACAGAAAGCGAGTGCCGAGTTTGGCATACCCACAGGAACACTTTATGGACGCTGCAAGCGCGAGGGCATTGAACTGTCGCGTTCAAATCCCACACCATGGTCCGAAGATGCCATGAATGAGGCCTTGAACTCAGTGCGCGTGGGCCAAATGTCCATCAATCAAGCGGCGATACACTATAACCTGCCCTATAGCTCGCTCTATGGCCGCTTTAAGCGTGGCAAATACGATGTGGTGGCGAATACCAGTGGAGTGGCGCTAATGAATACCTCAGGCAATACAACCGGCAGCATTGAGATTATCGAGCATAGTCAAGAGAATTCGGTAGGTAGCCAACAAGCGTTAGACCATAAGCATAAGTCATGGAACTGA
- Protein Sequence
- MPNFGMRSARVLGLLRTAEQLKIKGLCETAENADDLNDAATATITVSENIQQSVVGNIPSLRKSRLKRSKSPDLQHQHHPQTILIQGQNQTSIVSLQQTVDGNYIPVGGNGDDSDVDQEHEHEHIDEHEHDHDHDSKPGKICKTEHSVASPASNSSNASNNAASVSGVTAAGQAIVTQIVVARDGKDTKNMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEALDIDNHLAQQIHRLDQSPMHSIGHHHTGDESNSQLVQHIKSEVIEAKHLAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGHVTHAEIGGATVMEIDPSQIKHEPGMIITPEIVNMMSSGHMDMYNSDTSEDSMMIANGSPHDQKEPHYTNLDQQHGLGGSKGQFNGPKAWTQDDMNSALDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVANTSGVALMNTSGNTTGSIEIIEHSQENSVGSQQALDHKHKSWN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -