Basic Information

Insect: Lordiphosa clarofinis
Gene Symbol: -
Assembly: GCA_018904275.1
Location: JAEIGQ010000168.1:536043-537833[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 1.4 72 4.2 1.3 6 23 259 276 259 276 0.98

2 8 0.00026 0.013 16.0 1.9 1 23 282 304 282 304 0.99

3 8 0.079 4 8.2 3.0 1 23 313 335 313 335 0.93

4 8 0.0029 0.15 12.7 1.9 3 23 345 368 345 368 0.90

5 8 0.00072 0.037 14.6 0.0 3 23 376 396 375 396 0.96

6 8 0.0015 0.074 13.6 0.2 2 23 405 427 404 427 0.97

7 8 2.5e-07 1.3e-05 25.5 1.5 1 23 464 486 464 486 0.98

8 8 0.00011 0.0058 17.1 4.9 1 23 492 515 492 515 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	1.4	72	4.2	1.3	6	23	259	276	259	276	0.98
2	8	0.00026	0.013	16.0	1.9	1	23	282	304	282	304	0.99
3	8	0.079	4	8.2	3.0	1	23	313	335	313	335	0.93
4	8	0.0029	0.15	12.7	1.9	3	23	345	368	345	368	0.90
5	8	0.00072	0.037	14.6	0.0	3	23	376	396	375	396	0.96
6	8	0.0015	0.074	13.6	0.2	2	23	405	427	404	427	0.97
7	8	2.5e-07	1.3e-05	25.5	1.5	1	23	464	486	464	486	0.98
8	8	0.00011	0.0058	17.1	4.9	1	23	492	515	492	515	0.98

Sequence Information

Coding Sequence: ATGACGTGTTTTCTGTGCACTCAGTGCGCGTCAAGTGACGCCATTGAGCTCAGATCTGCTGAAGCCGCAGAAATCAAGCTAAAAGAAATAATTGAGAAACATTTCTGGCTGCGGATTGACAGCGGCGAAGCCAACTATGTGTGTAGGTCTTGCTGGGAGCAAGTGTCTCAATTTCACAACTTCTATGAGAATGTGCAGCAGGCCCACCAGGCTCTTCTGGAGAAGAGTGGGGCGGTTGAGATTCCGGTAAAGAGTGAAATTCTACCGGAGAGGGAAAGTGTGGCAGCTGCCGTAAAGCGTAGGCGTGGTCGTCCACGCAAATCGGAGGAAACCGACGCAGCTATGGCCAATGAAGAGCTCAAAGCTGTTCTGGAGCAAATCAATTTAAATGAAATTAAAATTGAGTTTCCCGAGGCAGATTTAACTATGGCCGATGTGTTGCAAGATGAGCAGGATGAGGAGGAGGAAGCCGAAACGGAAGAGTATCTGGATGAAAGGTATGAGGAGGAGGATGACGATGAAGCGGAAATAGATCCGCCCAGTAAAAAGCCACGCAAAGGCCGCCCCCGTGGTCGAGGTCGTGGCCGGGGAATCTCTAGCAAGCCACCTGCCAGAGCCGGCGAAACTAATAAGCAGAAGTCTAACGAATTCAATGACTACATACGGGAACACTACAAGGTCCAGTGCCATGTGTGCAGCTTGCCGCAGGAGGGTTTCTCAGAGATGCTCGTACATATGCGTCAGGAGCACCAACAACGTGGCTACGCCATGTGCTGCAATCATAAATTCTACAAGCGGGGCGTTCTGGTCGATCACCTGCGTCGTCATCAGGATCCCGAACTCTTCAAGTGTCACCTGTGCGATCGTGTTATGGGTCAGAGACGTAGTCTGGAGCTGCACATGCGCATGCATGAGATCAAATCGCGTGGCCGACTCTATCAATGTGACCAATGCTCAAAGAGCTTCTTCAGTCCAATTGTCTGCGAGCGGCACAAACTCACCCACATTCCCAAGGAGCAGTGGCAGGTGGGCTGCACTCACACCAACTGCGACAAGACGTTCCCTAACCAGTACACTATGCAGCAACATGTGAAACTGGTGCATTTGAATCTCTATGCCAAGATCTGTGACGTGTGCGGCAAGTCCATTAGGGGTAGGGAGGCCTTGGCCAGGCATATGGAAGAGCATACGGGTACACCACAAAAGGCCATCAAGTGTGATCTGTGCGACTCGATACTAACCACCAAATATGGTCTGGCTCGTCACATTAAAATGATGCACACGGCAGAGAACCTCCAGCCCATGCAGTGTGAGTTCTGCCTCAAGATCTCCCCCAGCTTGCAGGCCCATCAGCATCACATCAAGTATACGCACAACACAGCTCGCACGCATCAGTGTCCCATGTGTGAGAAGGCATTCAAGAGGCCCAAGGAGTTGAGGGAACACATGACCACCCACACGGGTGAGGTATTGTACACCTGTCCGCACTGCACACAGACGTTCAACTCAAATGCAAATATGCATGCCCATCGAAAGAAAATGCATCGCAAGGAATGGGAAGAGTATCGTATACAGGCCAAAAATCGAAAAACCGACACCATTATCGCTGTTTGTGTAAGAAAGACTACGGAGTCGCGGCAAGATGACAAGAAAGAAGTTGTTCCCTCTGCTTTGGAGTAA
Protein Sequence: MTCFLCTQCASSDAIELRSAEAAEIKLKEIIEKHFWLRIDSGEANYVCRSCWEQVSQFHNFYENVQQAHQALLEKSGAVEIPVKSEILPERESVAAAVKRRRGRPRKSEETDAAMANEELKAVLEQINLNEIKIEFPEADLTMADVLQDEQDEEEEAETEEYLDERYEEEDDDEAEIDPPSKKPRKGRPRGRGRGRGISSKPPARAGETNKQKSNEFNDYIREHYKVQCHVCSLPQEGFSEMLVHMRQEHQQRGYAMCCNHKFYKRGVLVDHLRRHQDPELFKCHLCDRVMGQRRSLELHMRMHEIKSRGRLYQCDQCSKSFFSPIVCERHKLTHIPKEQWQVGCTHTNCDKTFPNQYTMQQHVKLVHLNLYAKICDVCGKSIRGREALARHMEEHTGTPQKAIKCDLCDSILTTKYGLARHIKMMHTAENLQPMQCEFCLKISPSLQAHQHHIKYTHNTARTHQCPMCEKAFKRPKELREHMTTHTGEVLYTCPHCTQTFNSNANMHAHRKKMHRKEWEEYRIQAKNRKTDTIIAVCVRKTTESRQDDKKEVVPSALE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00914846;
90% Identity: iTF_00918589;
80% Identity: -