Basic Information

Insect: Lordiphosa clarofinis
Gene Symbol: PRDM1
Assembly: GCA_018904275.1
Location: JAEIGQ010000059.1:95683-102808[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 4e-05 0.002 18.5 2.5 1 23 812 834 812 834 0.99

2 5 1.2e-05 0.00061 20.2 5.1 1 23 840 862 840 862 0.98

3 5 2.5e-06 0.00013 22.3 4.3 1 23 868 890 868 890 0.98

4 5 0.00084 0.043 14.4 2.4 1 23 896 918 896 918 0.97

5 5 0.00014 0.0072 16.8 0.1 1 22 924 945 924 945 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	4e-05	0.002	18.5	2.5	1	23	812	834	812	834	0.99
2	5	1.2e-05	0.00061	20.2	5.1	1	23	840	862	840	862	0.98
3	5	2.5e-06	0.00013	22.3	4.3	1	23	868	890	868	890	0.98
4	5	0.00084	0.043	14.4	2.4	1	23	896	918	896	918	0.97
5	5	0.00014	0.0072	16.8	0.1	1	22	924	945	924	945	0.96

Sequence Information

Coding Sequence: ATGAAGATAAAAAACTTCAAACCGCCACATCATAAACTGAATCGACGTGGACGCAGTCGCAGTCGTAGCCCCACCCCAGATGGCACACAGGATTACGATGTGACACGCATGCGTGAGGAGGATTTTGAGAGGCTGGCGGTGTATCTGGTGCCCGATGTACAGGCCGAGCGAGGGTTGGCCAATCGGGCGGATAAGACATTGCCCAGAAGTCTGACGCTTAAGTCATCAAATGTCTACTCAACGCCAAATGATAAGACTGAAGGAGTTTGGAGCAGCGGTGTCATACCGCGCGGTACACGCTTTGGCCCTTTCGAAGGCATTCCAACCTCAAACTATCCTAACGATAAGAATAAGGCGCGCTATTTCTGGCGGGTGCAGGGAACACGCCACATAACCTACGGGAATATTAAGATCTTCAAGGACGATGACTATTATTATTTGGATGGTTCGGATCGTTCTCAGTCCAATTGGATGCGTTATGTGGCCTCAGCGTTCAGTTTGTCCGTCATGAATCTGGTGGCCTGTCAGCATCAGGAGAACATCTACTTCTATACCACCCGCGATATACTGCCCAATGAGGAGCTCATGGTCTGGTATTGCAAGGACTTTGCCAGTCGCTTGGGTTATGATGTGGATCCGGAGCGCACCATATTCGGTGCCTGCAAACAGGATGTGGAGGAGGATGTAGAGGAGATAGATGAGGATGAAGATATTTCGGCCAAGAAACCTCACTATTCAATGCCAGCTCCTGAGATACCCGCCGAGGTAGCCGTTAGCCATATAACCTATGTGATGGGTTTGCATCTTCCCGGAGCGAGCGCAGCGGGTGCAACTGGAACAACTCCTCCTGCGGCGGGAACAACATGTTGTCGTCGCGCCAGTCCACCAGCCCATGTCAGCACCACCACCTCCCATCACCCGCATCATCATCATCAGCAGCACGGTCGCCAAACCTCAGTTATAATGGGACAAGATCGTTCGCCGCTGAACAGTGACAAGGAAGCGGTGGGTTCGCCTCTGTCCGGCATGGCTCAGGATGGTAGCGTGCGCTCCGTCAGATCGGATGAGGGCTATCACAGTAATGAGTGTCAGGAGGATGGTCTCACACCACCCGAGGACTCCAGCGACAGTGAGAGTGAGCATAACTATGTCTTGGATTGCTCCAAGAAGGCTATAGCACCCAAGGAGACAGTGATTGCTCAGGCACAGAAAGTTCAGGGTAGCACCAGCTCACCGCCAGCAGTGGTAGTGGCCAGTCCCAGTCCACCTACGGCCCCATCGATCTGTGAGCCGGATAAGAATGAGTATCGCAAGTTCAAGGTGAAGATGCCTCTGAAGTATGAGTTCAAGAACAAGAGCTGTGTGAAACAGGAGCCGCTTAAGGAGGCAGATGAAGAGATGCCCATCACCAGGGGGGGAGAAGATGAAGAGGACCGCCTAAATGAACGCCTACATGTGGCTGAGGAGGTGTCCTGTCCCTCGACTACCACCCATTTGGGAGAGGACCCGCGACACTTGGACAGGGAACGAGAATTAGTCCACAATCAGCTGCAACCCGCCTCCTCCACCGTTATAGTTCTAGAGCATCCAGTGGGTGGTCAGGCCAGAACTATAGTACCCCTAAGTAAACCCTATTACGAGGCGGATCCCCCACCCGAACGCTATGTGAGATTCAGTCAACCCTCCTCCAGCATACTGGAGACCATTTTAACCAGCCAGCATCGCCTGGAGGCGGCGGCAGCGGCGGCCAATGCCTGTAGACAGGCAAATGCAGCCACTCCTCCACCCACTTCACCCACAGAAATGGCCTACAGCTATAAGAAGTCTCAGAGGTATGGCAATGCCGTAAGTCCGGACTCCAGCTCGAATCTGGGTCAGCCGCAGGAGCTAAGCGTAGGGGTAAACCTCTCAGAGCAGGAGCCACTGACTCGTGCGACTCTGATTAAGGGCGAATGCTCGCCTCCACCGCCCAACAATCACCACCATCATCATCATCACCACAATGTGATCTTTTCCCCCTCACGGCATGCGGCCTACCTGAGCGGACCTGGCGGCGGTGAGAATGGAGCCAGCAGCCCCAATTATCCAGGCTATCCCCATCACTATGGCAGTGCGGCCACCTCTACCTTCCACTCACCACCCCACAGTTCACATTCACCCTTCGATCGGCAGTCGAATGCCTCAAGTGGCGCTGGATCTGCTTCAAATCTGCATCTACTGCAGAGTAGCACCCAAATGCTGAACCATCCTTTGATGCAGCCTCTCACACCCCTGCAAAGACTCTCACCCCTACGCATTTCACCACCCAGCAGTCTGAGTCCCGATGGAAATTCCTGTCCTCGCAGCGGTAGTCCCCTAAGTCCCAATTCGTTGGCCTCTAGGGGTTACCGTTCGCTACCCTATCCGCTCAAGAAGAAGGATGGTAAAATGCACTACGAGTGCAATGTGTGTTGCAAGACCTTCGGTCAGCTGAGCAATCTCAAGGTCCATCTGCGTACCCATTCGGGCGAGCGTCCCTTCAAGTGTAATGTGTGCACCAAAAGCTTTACCCAATTGGCCCACCTGCAGAAGCATCATTTGGTGCATACGGGCGAGAAACCGCATCAGTGTGACATCTGCAAGAAACGCTTCTCCAGCACTTCGAATCTGAAGACCCATCTGAGGCTGCACAGTGGCCAGAAACCGTATGCCTGCGATTTGTGTCCCCAAAAGTTTACACAATTTGTGCATCTGAAGTTGCATAAACGGTTGCATACCAATGACAGGCCCTATGTGTGTCAGGGTTGTGACAAGAAGTATATCAGTGCCTCCGGATTGCGTACGCATTGGAAGACTACGAGTTGTAAACCGAATAATCTGGAGGAAGAACTGGCTATGGCGGCAGCGGCTACTTCTGAGTGTCTAGATAAAGACCTGCCGGAGCCGGATTCCCGTGAGGCTTATGAGCAATTGCAACAGCATATGCATCCAGTACATCCCAGCTTACGTCATTCGCCGCCACGCCTCATACCACTGGGTCAGCAGACGCCTTTGCTTGGCCTGGCGGGACAACAGCAGCAGCAGCAGCAACAACAACAAGCACCACCCCACATGATGCTCTCCCAGCATGCAGCTGCACCCATGCTATTGACCACAGCCACAAGCCAGTTGCCACCACCAGCATTGCCCCATCATCAGGCCACATCGGCTTCCCATCCTCCAAATCACCACCACCATCATCATCCGCAGCAGCATTCGCATTCCCATCATACGCATCATCAGGCGCCGCTGCCGCCGCCGCCCACACACTCACCACAGGCCAGCCTCAAGTCACTGAAACCGCTGTCCGAACCGGCCTACATGCATGCCCCCAGTCATGTCCAGGCCCAGGAAAGTCGACCCTCGGTGATTGAGTCCTCCAATCAGCCCATGATCATTGAATGCACGTAA
Protein Sequence: MKIKNFKPPHHKLNRRGRSRSRSPTPDGTQDYDVTRMREEDFERLAVYLVPDVQAERGLANRADKTLPRSLTLKSSNVYSTPNDKTEGVWSSGVIPRGTRFGPFEGIPTSNYPNDKNKARYFWRVQGTRHITYGNIKIFKDDDYYYLDGSDRSQSNWMRYVASAFSLSVMNLVACQHQENIYFYTTRDILPNEELMVWYCKDFASRLGYDVDPERTIFGACKQDVEEDVEEIDEDEDISAKKPHYSMPAPEIPAEVAVSHITYVMGLHLPGASAAGATGTTPPAAGTTCCRRASPPAHVSTTTSHHPHHHHQQHGRQTSVIMGQDRSPLNSDKEAVGSPLSGMAQDGSVRSVRSDEGYHSNECQEDGLTPPEDSSDSESEHNYVLDCSKKAIAPKETVIAQAQKVQGSTSSPPAVVVASPSPPTAPSICEPDKNEYRKFKVKMPLKYEFKNKSCVKQEPLKEADEEMPITRGGEDEEDRLNERLHVAEEVSCPSTTTHLGEDPRHLDRERELVHNQLQPASSTVIVLEHPVGGQARTIVPLSKPYYEADPPPERYVRFSQPSSSILETILTSQHRLEAAAAAANACRQANAATPPPTSPTEMAYSYKKSQRYGNAVSPDSSSNLGQPQELSVGVNLSEQEPLTRATLIKGECSPPPPNNHHHHHHHHNVIFSPSRHAAYLSGPGGGENGASSPNYPGYPHHYGSAATSTFHSPPHSSHSPFDRQSNASSGAGSASNLHLLQSSTQMLNHPLMQPLTPLQRLSPLRISPPSSLSPDGNSCPRSGSPLSPNSLASRGYRSLPYPLKKKDGKMHYECNVCCKTFGQLSNLKVHLRTHSGERPFKCNVCTKSFTQLAHLQKHHLVHTGEKPHQCDICKKRFSSTSNLKTHLRLHSGQKPYACDLCPQKFTQFVHLKLHKRLHTNDRPYVCQGCDKKYISASGLRTHWKTTSCKPNNLEEELAMAAAATSECLDKDLPEPDSREAYEQLQQHMHPVHPSLRHSPPRLIPLGQQTPLLGLAGQQQQQQQQQQAPPHMMLSQHAAAPMLLTTATSQLPPPALPHHQATSASHPPNHHHHHHPQQHSHSHHTHHQAPLPPPPTHSPQASLKSLKPLSEPAYMHAPSHVQAQESRPSVIESSNQPMIIECT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00920172;
90% Identity: iTF_00916658;
80% Identity: -