Lclr013990.1
Basic Information
- Insect
- Lordiphosa clarofinis
- Gene Symbol
- RREB1
- Assembly
- GCA_018904275.1
- Location
- JAEIGQ010000020.1:1036958-1046061[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.043 2.2 9.0 0.8 1 21 223 243 223 245 0.93 2 11 0.0004 0.02 15.4 0.2 1 23 255 277 255 277 0.98 3 11 2.1 1.1e+02 3.7 1.8 2 20 406 424 406 426 0.93 4 11 0.01 0.51 11.0 0.1 1 23 567 589 567 589 0.97 5 11 1.5e-05 0.00075 19.9 0.7 1 23 599 621 599 621 0.99 6 11 0.00099 0.05 14.2 2.0 1 23 627 650 627 650 0.97 7 11 0.0035 0.18 12.4 2.0 1 23 888 911 888 911 0.95 8 11 0.0001 0.0052 17.3 0.3 2 23 1214 1235 1213 1235 0.97 9 11 0.17 8.8 7.1 6.3 1 23 1241 1264 1241 1264 0.97 10 11 0.01 0.51 11.0 0.5 3 23 1449 1469 1447 1469 0.96 11 11 0.0016 0.081 13.5 4.8 1 23 1475 1497 1475 1497 0.99
Sequence Information
- Coding Sequence
- ATGCTGGCCACACCGCAACAACAGCCACCAAAATCCACTCACGAGTCTGATATGGAACGCCCACGTAGAGACTCCACCACCTCAGAGTCCTCATTGGAGCATCTCGATCTCGGTCGCACACCAAAGAAGCTGAGCAGCAACAGCGGAGCCCCGCAGCCCACCTCAACGCCACACGAGGTGTCCTCCTCACGCAAACGCAAACTGCGTCAGCAGCCGCATCATCATTTGTCCGCAGCATCTGAGGATGAGTTTGAGGACCAGCTGGACGCAACGGCAGCAGCAACAGCCAACTCTGCAGTGCAGCGACCGCGTCACAAACAGCGACGCAACGCTGCCGCCGCTGCCAGCGCCAGCATTGTAATGGATTACAGTGCGGCTGATGTCAATTCGCTGCGCAAGAAATTCCGTCTGAATCGCAGCAGCGCCAGCACCCTCAACGGTGAACTCTCCGAATCCGGATTTGTGGATGGCAGCGGCAGTGGCTTTCTGCTGAGCAATCATAGTGGTGCCGCCGCCGCTCTGGCTGCCGCCTCCGTCACCACCAACAATGCGGCCAGTGCCAGTGCTTTGGCCTCCAGTTCGGCCAGTTCGGGTGCCTCATCGCCGCAGGGACTGTGCCTGTCCAGCGCTGAATCTGGCATTGGGGCCGGCGATGAGCATATGAAATACTTGTGCCCCATTTGTGAGGTGGTTTCGGCCACGCCGCATGAGTTCACCAATCACATAAGATGTCACAATTATGCGAATGGCGATACTGAGAATTTCACCTGCCGTATTTGCTCCAAGGTGCTCTCATCGGCCTCCTCGCTGGACAGACATGTTTTGGTCCACACCGGTGAGCGTCCCTATGAAAGCGATGCCAGCTGCTCCACGGATGTGTCCAGTGCCAATAGTCAGAGCAGTAGCTCCCAGACCAACAACAATAGTCACAAGGCCACCAATAGGGAGGCGGGTAAACTGAAGACCAATATCAATAATAATATTATGGCTAAGGGCGAAGAGGAAGAGCAGGAGGAGGAGGAGGACGAAGTAGATGTGGCTTTGCCTTTGTCCATAACCAGTACACCAGATGTGGACACATTGCTGGCGGGCGCCGGTGCGGCCTCACCTGTGCCCAGCTTGGGTTTGAGTTGTCCTGCCTGTGGGGCTTCAGATTTTGATTCCCTGCCTGGTTTGTGTGCCCATTTGGATAAACAGCATGGTGATATACCAGCCAAGTGCAGGGATTGTGAGGTCATCTATGCCACACATCGTCAACTGCAAATGCATAGCTGTCGTGCGGCAGTGGGTGGGGGTTTGCCTCCTTTACTGGGAGCCAGCAGTTCGCCTTTGCCCGAGGAACAGGAGCAAGATAATGATGAAGAAGAGGAGGAGGAGGAGGAGGAGGGGGAAGAGGAGGAGGAGCGCCAACAGGCAAACTCCCAACGCGAGGACTTCTTTCAGCAGCTGTATCTCAAGGGCAAGGGTTCACCACCCTCACCCATTAAGCATGAGCCAGCGGATAGCAAGGATCTGGCTGATATACAGAGCATACTCAACATGACCAGCTCCAGCTGCACCTCCAACTTTCTGCGCAATTTTGAGCAATCGGTGAACACCCCCTGCTCCAGTCAGTACAGTTTGGATGGACGCGATGGCGAGGAAGAGGCCCAGGATGTGTTCACCTCAGAGTTTCGTCGCATGAAACTGCGCGGCGAGTTCCCCTGCAAACTGTGCACGGCGGTGTTTCCCAATTTGCGTGCCCTCAAGGGTCACAATCGTGTGCATCTGGGAGCAGTGGGTCCCGCAGGACCCTTTCGCTGCAACATGTGTCCCTATGCGGTGTGCGACAAGGCCGCATTGGTGCGTCACATGCGCACCCACAACGGAGATCGTCCCTACGAGTGCGCCGTGTGCAACTATGCCTTCACCACCAAGGCCAACTGTGAGCGTCATTTGAGGAATCGTCATGGCAAAACCAGCCGCGAGGAGGTAAAGCGAGCCATAGTCTATCATCCGGCCGAGGATGCCAGCTGTGATGAGAGCAGCAAGTCTCGCTTGGGCGAGGATCTCAATGATTTGAGTTTCCGTTCGGTGACACCACCACCGCCGCCGCCAGCAGAGAGCTCATCCCAGCTGAAGCATATGCTCATGGCGGAAACGCCTCCAACCCAAACACAGCAGCCGCCTCTGAAGATTCAAGTCAAGAGTCTGGATCAGCTGGTGGATAAGCCTGTAAAGCCCAGCACTCCGGCAGCCATGGACTTGAGCATGGATGTTTTAGACTTGAGCAAGAAACCTGCCATACCAGTAGCTAGTCCCGCCACACCGGCTACTGAGCTAGCCTCCGCTTTGGAGCAGCAACATCAACAGCAGCAGCAACAGTTGCTCTTGGCCCAACAGCAACTCTTTGGAGCAGGCGATGCAGCCCATCAGTATATGCAGCAATTGTTCCGTAATCTAATGTTTCAACAAACCTCAGCCTTTCCCTTCTTTGGGTTTCCTTTGGCTCCGCCCCCGGCAGCAGAGAAGCCCTCTACCGCTCAGCCGCAATTGAGTCCACCGCAACGCCTCATACCCGTGGGTGTGCCCGTACCAGCCGGTGGACCCGTCAAAATGGTCATCAAGAATGGTGTACTCATGCCCAAGCAGAAACAGCGTCGCTATCGCACCGAACGTCCCTTTGCCTGTGAGCATTGCTCGGCTAGATTTACCCTACGCTCCAATATGGAAAGACATGTCAAGCAACAGCATCCCCAGTTCTATGCCCAGCGTCAGCGTAGTGGACACCATGTGATGCGTGGACGTGGAGCCTCCAATGCGGCTGCAGCTGCGGCTGCTGCAGCGGCTGCCGCTGCCTCTATGGGTCCCAATCATGCACCCATTTCGGAGCAGGTGAAATATGCCATTTTGGCTCAACAGTTGAAGGCACACAAGAACACAGATTTGCTGCAACAGGCCTTGGTTCAGGGTTCCAGCAGTGTGGCCCATAATACTCTAATGAATTTTGCCTACAATCCCAATCCTCATACTCAAACCAATGGCAATGGCCAGGTGGCTAATGCCTTGGATGATGATGAGCCCAAGTTGGTCATAGACGAAGATGAGGCTGAGGAAGTAGAGGAGTTTGAGGAAATGGATGAGGAGGAGGATGAAGAGGAGGAGGAGTATGAGTCAGAGGAGTTACCCCAGCAGCCCGTCACTACTCCCACTCCCACTCCCGCCCCCATAGAGGCAGCCAAAAAGGTGGCCGAAACCATACTCGAGCAGGCCATCAAGGCGGGCAAGCCCACTAGTCCCGATTTGCCCACCCAACCACCCCCACCAACACCACCACACACCATGAAAACCATGATTGCTCAGGCCGAGTCCGTGGCCAAATCCTTAAAAGAAGTGGCCAGCTCCCCCTTTAAGGATGAATCTCAGGATCTGGTCCCGGTGGCCAAGCTGGTGGACAATGCCACCAGCAACCAAATGAGCTTCAATAGCTATTTCCGTCCCAGCGATGTGGCCAACCATATGGAACAAAGCGACGAAGAGGGTCTGGTGGCCTCGGGCAGTGCCAGCGAAAGCAACAACTCCGGCACAGAGGATGTCACCTCCAGTTCCAGCAGTGAGCCCAAAAAGAAATCCGCCTACAGTCTGGCCCCCAATCGTGTGTCCTGTCCCTACTGTCAGCGCATGTTTCCCTGGAGCAGTTCCCTGCGCCGTCATATACTCACCCACACGGGTCAGAAACCCTTCAAATGCTCGCACTGTCCCTTGCTCTTCACCACCAAAAGCAACTGTGATCGTCATCTCTTGCGCAAGCATGGCAATGTGGAGTCGGCCATGTCGGTGTATGTGCCCACCGAGGATGTAAGTGAACCCATTCCAGTGCCCAAGTCGGTGGAGGAAATAGAGCTCGAAGAGCAGCGTCGTCGGCAGGACAAAGAGCGTCAGGAGCAGGAGGAACGTGAACGGGAGAAGGAGCGAGAGCGCGAGCTGGAACTGGAGCGTGAACGAGAGCGTGAAAGAGAGCGCGAGCATCTAATACAACAGCTGGCTGCAGCGGCTCAACTAAGTCAGCAAATGAATGCAGCGGCAGCAGCCGCAGCAGTCGCCTCCGCCAGCGAGTCAGCAGGCGGAGATTTGCCCTACAAGTGTCATTTGTGCGAGGGCTCCTTTGCCGAGCGCTTGCAGTGCCTGGATCATATCAAACAAACCCATGCCCATGACTTTGCCTTGCTGTTGGCCAAAGGAGCCATTGAAACCGAAGCTCTGGAGCCGCCACAGCCGCCCTCAGTGCCCGCTCCCGCCTCCGATGATGAGGCCGGGAGTCGTGGTGGGGCCAAGTATCCCGACTATAGCAATCGCAAGGTTATATGCGCTTTCTGTGTGCGTCGCTTTTGGTCCACCGAGGATTTGCGTCGTCATATGCGCACCCATTCGGGGGAACGTCCCTTCCAGTGTGAGATTTGCTTGCGTAAGTTTACTTTGAAGCACAGCATGCTGCGTCACATGAAGAAGCATAGTGGACGTTCCCATAATGGTGAGTTACCGGGCTCGGATTGTTCTGATGATGAGCAGGTAACCACACCGCCTGCCACACCCATACCCATTAACAACAACAATAGCAACAACAACAACAACCATGTCAACTCCAAGCTGGGCCTACGCCTGCCCAAGCTGCACGAGCTTTTAGACAAGGCCAATGAGTGGCGTGCCAGTCGCCTAGTGGGCGAGCACAAGGAGAACATAGGCGAGGCCAGCACCCCATCGGCCCAGACCGCCACCTCTGCCGTTTCCCAAGTGGTTGGTTCGGACTTGATAGGCAATCTCTTGGGCATCAGTGATCAGGGTATACTCAATAAGTTGCTGTCGTCGGCCGATGAGGCCGCCAAGTTGTTGGGAGTAGATAAGTAA
- Protein Sequence
- MLATPQQQPPKSTHESDMERPRRDSTTSESSLEHLDLGRTPKKLSSNSGAPQPTSTPHEVSSSRKRKLRQQPHHHLSAASEDEFEDQLDATAAATANSAVQRPRHKQRRNAAAAASASIVMDYSAADVNSLRKKFRLNRSSASTLNGELSESGFVDGSGSGFLLSNHSGAAAALAAASVTTNNAASASALASSSASSGASSPQGLCLSSAESGIGAGDEHMKYLCPICEVVSATPHEFTNHIRCHNYANGDTENFTCRICSKVLSSASSLDRHVLVHTGERPYESDASCSTDVSSANSQSSSSQTNNNSHKATNREAGKLKTNINNNIMAKGEEEEQEEEEDEVDVALPLSITSTPDVDTLLAGAGAASPVPSLGLSCPACGASDFDSLPGLCAHLDKQHGDIPAKCRDCEVIYATHRQLQMHSCRAAVGGGLPPLLGASSSPLPEEQEQDNDEEEEEEEEEGEEEEERQQANSQREDFFQQLYLKGKGSPPSPIKHEPADSKDLADIQSILNMTSSSCTSNFLRNFEQSVNTPCSSQYSLDGRDGEEEAQDVFTSEFRRMKLRGEFPCKLCTAVFPNLRALKGHNRVHLGAVGPAGPFRCNMCPYAVCDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHGKTSREEVKRAIVYHPAEDASCDESSKSRLGEDLNDLSFRSVTPPPPPPAESSSQLKHMLMAETPPTQTQQPPLKIQVKSLDQLVDKPVKPSTPAAMDLSMDVLDLSKKPAIPVASPATPATELASALEQQHQQQQQQLLLAQQQLFGAGDAAHQYMQQLFRNLMFQQTSAFPFFGFPLAPPPAAEKPSTAQPQLSPPQRLIPVGVPVPAGGPVKMVIKNGVLMPKQKQRRYRTERPFACEHCSARFTLRSNMERHVKQQHPQFYAQRQRSGHHVMRGRGASNAAAAAAAAAAAAASMGPNHAPISEQVKYAILAQQLKAHKNTDLLQQALVQGSSSVAHNTLMNFAYNPNPHTQTNGNGQVANALDDDEPKLVIDEDEAEEVEEFEEMDEEEDEEEEEYESEELPQQPVTTPTPTPAPIEAAKKVAETILEQAIKAGKPTSPDLPTQPPPPTPPHTMKTMIAQAESVAKSLKEVASSPFKDESQDLVPVAKLVDNATSNQMSFNSYFRPSDVANHMEQSDEEGLVASGSASESNNSGTEDVTSSSSSEPKKKSAYSLAPNRVSCPYCQRMFPWSSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNVESAMSVYVPTEDVSEPIPVPKSVEEIELEEQRRRQDKERQEQEEREREKERERELELEREREREREREHLIQQLAAAAQLSQQMNAAAAAAAVASASESAGGDLPYKCHLCEGSFAERLQCLDHIKQTHAHDFALLLAKGAIETEALEPPQPPSVPAPASDDEAGSRGGAKYPDYSNRKVICAFCVRRFWSTEDLRRHMRTHSGERPFQCEICLRKFTLKHSMLRHMKKHSGRSHNGELPGSDCSDDEQVTTPPATPIPINNNNSNNNNNHVNSKLGLRLPKLHELLDKANEWRASRLVGEHKENIGEASTPSAQTATSAVSQVVGSDLIGNLLGISDQGILNKLLSSADEAAKLLGVDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00920114;
- 90% Identity
- -
- 80% Identity
- -