Basic Information

Insect: Lordiphosa clarofinis
Gene Symbol: prg
Assembly: GCA_018904275.1
Location: JAEIGQ010000236.1:347038-348799[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 1.2 59 4.5 3.8 1 23 227 250 227 250 0.91

2 9 0.0013 0.068 13.8 0.1 3 23 258 279 256 279 0.97

3 9 7.4e-06 0.00038 20.9 0.3 1 23 285 307 285 307 0.97

4 9 2e-08 1e-06 28.9 2.6 1 23 313 335 313 335 0.98

5 9 6e-06 0.00031 21.1 0.5 1 23 341 363 341 363 0.98

6 9 4.7e-05 0.0024 18.3 1.0 1 23 369 391 369 391 0.98

7 9 1.1e-05 0.00057 20.3 0.9 1 23 427 449 427 449 0.96

8 9 4.9e-05 0.0025 18.3 0.3 1 23 454 477 454 477 0.91

9 9 0.2 10 6.9 0.7 1 23 481 503 481 503 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	1.2	59	4.5	3.8	1	23	227	250	227	250	0.91
2	9	0.0013	0.068	13.8	0.1	3	23	258	279	256	279	0.97
3	9	7.4e-06	0.00038	20.9	0.3	1	23	285	307	285	307	0.97
4	9	2e-08	1e-06	28.9	2.6	1	23	313	335	313	335	0.98
5	9	6e-06	0.00031	21.1	0.5	1	23	341	363	341	363	0.98
6	9	4.7e-05	0.0024	18.3	1.0	1	23	369	391	369	391	0.98
7	9	1.1e-05	0.00057	20.3	0.9	1	23	427	449	427	449	0.96
8	9	4.9e-05	0.0025	18.3	0.3	1	23	454	477	454	477	0.91
9	9	0.2	10	6.9	0.7	1	23	481	503	481	503	0.97

Sequence Information

Coding Sequence: ATGCTTAACCTGCCTGAGTCCACCACAACCAATGCCAAGCTGAGCATGGTTGTGGTTCCTGAAAATGATCAAGAACAGACTTCCTACTGCCGGCTGTGCCATCGCTTGTCAAGTGGACCAAATATATTTGAAGCTACGTTGGATTATTTTCAGCAGGGCAACATTGCGGATTTCTGCCATCAAGTCCTTGGAGTGCAGTACGAACGCCATGAGTCTCTGCCGGAAAGCATTTGCTCATATTGTCTAGAGTTGCTGGAGGATATTTTTGAGCATCGCAAGGGATTGGAAGAGCGAGAAATGGCCTTGCAAGCAGAGCTAAAGGAATTGTTAAAGCAAGATCCTAGATATCGTCCTGGGCTAAATGGTAATCCGGGTGTGTTTGAGCCGGAAGAGGGCTGCGTCATTGTAAGTGTGGATCCAGATAAGCTGTCGGAGACAAGTGAAGATGAATTTTTGATGGGCTCCGATGGCGATGAGGAGGAGGGCGAGGAAGAGGAGGACGAAGACGGCGAGCTTGATGAAGACGAGGAGGATGATGAGGAAAATGGTGAGGAAACAGAGATTCCTTTGGGCATGGATGCGGCACAGATGGCTCGCATGCAGATATCACGAGCGGGAGAAGAACCCGTAAATCAAATAGATACTATGGAGTTTCACATGGCACGTCCCAAGCTGTCATATCACTGCCAGTACTGCGACTTGGGCTTTACCCTCCAGACAGACTGCACGGAGCATGAGAACAGTTCGCACGACCCGGCTGCTCCGTTCGGCTGCAGCTATTGCAACTTGACTCTAACCACCCGACCCGCTCTGATAGCCCACATCAAAATGTTGCATGATGCCGACCGTCCGTATGTCTGTGCCCAATGCCGTAAGCCTTTTGTGCGTCGCTCCGATCTGAAAAAACATGCCCTGGTCCATACGGGTATCAGACCCTTCACCTGTCAAGTCTGCTCCAAGAGTTTCTCACGCAACACCAATCTGACCAAGCACATGCGCATTCATAGCAGTGTTAAGCCCTTCGTTTGCCAGCAGTGCCCACGCTCCTTTCAAACTGCCGTGGAGATGATGAGGCATATGCGTTCCCATGAGGAGATCAAACCATTTCAGTGCCAACGTTGTCCATACTCCTCGTCGCGCAAGGACAAACTAATGGCCCATCAGCAGGTACACCAAAAACGGGACTCCGTCGAGCAGCAAAACCAGCAACTCCCCCAGCAGCCGCCGCCGCAGCAGCACTTTTTCACGCCCACAAACAAACCCAAAACCTCGCGCGGTTTTCGTTGCGATGTGTGCGACAGAAGTTTCCAGCGCGAGCGGGATCTACAGCGCCATCGTGCCCTTCATATGGACACACTCTTTGCTTGCAAAATCTGTCAACAGGGCTTCAATCGTCGCGAGCAGCTGCAGCGTCATGAGTTGGAGGCTCACGGTCCCAGCTACACCTGCGCCCTCTGTTGCATTAGTTTCTTGCAGCAGGTGGAGCTGGAGAATCATTTGAAAGTGCATCAACTACAGCATCAAATAGCAAAAAGCACCCAAGAGGCCATGCATAATTTGGCCGAGCAAGCTGTTCCCGTCCCGGTGGTTCCTCCGCAGCCCGTGCAAATGCGACCCTCGGCCGCCGAGCTCTCCTTCTACAGTAATATGATACCCACTATGAATCTGGGCTTCTACAGCGAGACACGCCCCGAAGAGGAGTAA
Protein Sequence: MLNLPESTTTNAKLSMVVVPENDQEQTSYCRLCHRLSSGPNIFEATLDYFQQGNIADFCHQVLGVQYERHESLPESICSYCLELLEDIFEHRKGLEEREMALQAELKELLKQDPRYRPGLNGNPGVFEPEEGCVIVSVDPDKLSETSEDEFLMGSDGDEEEGEEEEDEDGELDEDEEDDEENGEETEIPLGMDAAQMARMQISRAGEEPVNQIDTMEFHMARPKLSYHCQYCDLGFTLQTDCTEHENSSHDPAAPFGCSYCNLTLTTRPALIAHIKMLHDADRPYVCAQCRKPFVRRSDLKKHALVHTGIRPFTCQVCSKSFSRNTNLTKHMRIHSSVKPFVCQQCPRSFQTAVEMMRHMRSHEEIKPFQCQRCPYSSSRKDKLMAHQQVHQKRDSVEQQNQQLPQQPPPQQHFFTPTNKPKTSRGFRCDVCDRSFQRERDLQRHRALHMDTLFACKICQQGFNRREQLQRHELEAHGPSYTCALCCISFLQQVELENHLKVHQLQHQIAKSTQEAMHNLAEQAVPVPVVPPQPVQMRPSAAELSFYSNMIPTMNLGFYSETRPEEE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00919361;
90% Identity: iTF_00918409;
80% Identity: -