Basic Information

Insect: Lordiphosa clarofinis
Gene Symbol: -
Assembly: GCA_018904275.1
Location: JAEIGQ010000004.1:318309-320129[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.0019 0.095 13.3 6.2 1 23 123 145 123 145 0.98

2 17 1.5e-05 0.00079 19.8 0.3 1 23 151 173 151 173 0.99

3 17 5e-06 0.00026 21.4 2.1 1 23 179 201 179 201 0.99

4 17 9.3e-07 4.8e-05 23.7 0.4 1 21 207 227 207 228 0.96

5 17 0.0051 0.26 11.9 7.6 2 23 236 257 235 257 0.97

6 17 9.5e-07 4.8e-05 23.7 4.6 1 23 263 285 263 285 0.98

7 17 8.7e-06 0.00044 20.6 8.1 1 23 291 313 291 313 0.98

8 17 1.8e-05 0.0009 19.7 3.8 1 23 319 341 319 341 0.98

9 17 0.0039 0.2 12.3 5.9 2 23 354 375 353 375 0.97

10 17 6.5e-05 0.0033 17.9 0.7 1 23 381 403 381 403 0.99

11 17 2.2e-05 0.0011 19.3 0.5 1 23 409 431 409 431 0.99

12 17 1.6e-05 0.00084 19.8 0.4 1 23 437 459 437 459 0.99

13 17 3.2e-07 1.6e-05 25.2 2.4 1 23 465 487 465 487 0.98

14 17 0.011 0.54 10.9 7.9 1 23 493 515 493 515 0.98

15 17 2.1e-06 0.00011 22.6 1.0 1 23 521 543 521 543 0.99

16 17 1.2e-05 0.00063 20.2 4.0 1 23 549 571 549 571 0.98

17 17 7.6e-06 0.00039 20.8 2.5 1 23 577 599 577 599 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.0019	0.095	13.3	6.2	1	23	123	145	123	145	0.98
2	17	1.5e-05	0.00079	19.8	0.3	1	23	151	173	151	173	0.99
3	17	5e-06	0.00026	21.4	2.1	1	23	179	201	179	201	0.99
4	17	9.3e-07	4.8e-05	23.7	0.4	1	21	207	227	207	228	0.96
5	17	0.0051	0.26	11.9	7.6	2	23	236	257	235	257	0.97
6	17	9.5e-07	4.8e-05	23.7	4.6	1	23	263	285	263	285	0.98
7	17	8.7e-06	0.00044	20.6	8.1	1	23	291	313	291	313	0.98
8	17	1.8e-05	0.0009	19.7	3.8	1	23	319	341	319	341	0.98
9	17	0.0039	0.2	12.3	5.9	2	23	354	375	353	375	0.97
10	17	6.5e-05	0.0033	17.9	0.7	1	23	381	403	381	403	0.99
11	17	2.2e-05	0.0011	19.3	0.5	1	23	409	431	409	431	0.99
12	17	1.6e-05	0.00084	19.8	0.4	1	23	437	459	437	459	0.99
13	17	3.2e-07	1.6e-05	25.2	2.4	1	23	465	487	465	487	0.98
14	17	0.011	0.54	10.9	7.9	1	23	493	515	493	515	0.98
15	17	2.1e-06	0.00011	22.6	1.0	1	23	521	543	521	543	0.99
16	17	1.2e-05	0.00063	20.2	4.0	1	23	549	571	549	571	0.98
17	17	7.6e-06	0.00039	20.8	2.5	1	23	577	599	577	599	0.98

Sequence Information

Coding Sequence: ATGGACCACAGAATCATAACCAAACTATGCTGCGTTTGCATGGCCAGTCCGGACACCAACTGGCTAAACATATACACCGACTCCGATGCGGGACACGACTTGATGTCTCTACTAGAAGAGACAACCGGCCGAGAGGTCAAGCCCTCTAAGAATCTAAATCTACCTGGAAGCATTTGCCCCTCTTGTTTGGCAGCGGCGAAAACTGCTTTGAATTTCAAGCGGCGATTGGAGCAGAGTCTGAAGTTTTTCACCAAACAGAACGAAAACAAACAACAACTCAAGCAAGAGGTTACCTCCAGCGATGGGAGCCATATGGAAGAGTTTGAATCTTTAACGGATGAGGAAGAAAATATGAAAAAAACTCCATTTCAATGTTCACACTGTCCAAAGATTTTTAAGCTAAAATGCAGGTTGAGAGTTCACCTGCAACGTCATACGGGCGAGCGTCCCTTCAAATGTTCCCTCTGCCCAAAGGCTTTTATTGCAGCAAATTATCTGAGGGCACACACACGCACACATACTGGGGAACGACCTTTCAAGTGTTCCGAGTGCTCAATGACTTTTGCCCAAAGGCGAACTTTAAGGAGACATCTTCTGACTCATACTGGTGAGCGACCATTTGAATGTCCTCATTGCAACACGACTTTCATTCAAAAGAGCGCTCTGACAAATCATCTACGCATTGAAACTGGTGAACGACCTCTTAAGTGTTCCCATTGCTCTCAGACCTTTTGCGGAACCAGCGATCTGAATAGACACCTACACTCTCATACTGGCGAGCATCCCCATAAATGTTCTGACTGCTCAAAGACTTTTAGCAGTTTGCGCAATTTGAAGCAACATCAACGCATACATACGGCCGAACGACCACACGAATGTTCCCACTGCTCCAAGGCCTTTTGCAGTAAAGAAAATCTGAGGCAGCATCTGCGCACGCACACTGGGGAACGACCTTTCAATTGTGCAGAGTGCTCTATGTCTTTTAGCCGCAGGAGCTGTTTAAAGAGGCATCTACTTACTCACACTGGCGAACAGCCATCGTCAAAAGACGATGCCTTGAAATGTTCCCACTGCTCGAAGATCTTTCGCTGTAAGGTCAATCTGGAGCAACATCAACGCTTACATACGGGAGAACGACCCTTTGAATGTTCTCACTGCTCGCTATCCTTTCCTGGAGCAAACTATCTCAGTGCACATCTGCGCACGCACACTGGCGTACGTCCTTTTAAGTGTACGGAGTGTCCCATGTCTTATACCCGAGGTGGTTCCCTAAAAAGTCACCTGCTTACTCATTCGGGCGATCGTCCTTTTAAGTGTACCGAGTGCCCCATGTCTTTTACTCGTATTGGCACTCTAAAAGGTCACCTGCTTACTCATTCAGGCGATCGTCCTTTCAAGTGTTCCCACTGCCCTAAGACGTTTAGCCGCACAGGCGATCTAAACCGACATTTACTCATTCACACTGGCGAGCGACCACACGAATGTTCTCACTGCTCAAAGACCTTTGGCTGTAAGCGCAATCTGGAGCTACATCTGCGCACGCATACGGGAGAACGACCTTACAAGTGTACAGAGTGTACCATGAGTTTTACCCAAAGTGGGGGTCTAAAGAGTCATCTACGATTACATACGGGCGAACGACCATTCGAATGTTCACAATGCTCCAAGGCTTTTAACAGTAAGCGCTGTCTGGAACGACACGTTCGCACACATACGGGAGAGCGACCTTACGAATGTTCCTACTGCTCGAAAGCATTTATCAGTAAGAACAATCTGGTTCAGCATCATCGTTTACACACAGTAAGGACGAACGTCCTTTAA
Protein Sequence: MDHRIITKLCCVCMASPDTNWLNIYTDSDAGHDLMSLLEETTGREVKPSKNLNLPGSICPSCLAAAKTALNFKRRLEQSLKFFTKQNENKQQLKQEVTSSDGSHMEEFESLTDEEENMKKTPFQCSHCPKIFKLKCRLRVHLQRHTGERPFKCSLCPKAFIAANYLRAHTRTHTGERPFKCSECSMTFAQRRTLRRHLLTHTGERPFECPHCNTTFIQKSALTNHLRIETGERPLKCSHCSQTFCGTSDLNRHLHSHTGEHPHKCSDCSKTFSSLRNLKQHQRIHTAERPHECSHCSKAFCSKENLRQHLRTHTGERPFNCAECSMSFSRRSCLKRHLLTHTGEQPSSKDDALKCSHCSKIFRCKVNLEQHQRLHTGERPFECSHCSLSFPGANYLSAHLRTHTGVRPFKCTECPMSYTRGGSLKSHLLTHSGDRPFKCTECPMSFTRIGTLKGHLLTHSGDRPFKCSHCPKTFSRTGDLNRHLLIHTGERPHECSHCSKTFGCKRNLELHLRTHTGERPYKCTECTMSFTQSGGLKSHLRLHTGERPFECSQCSKAFNSKRCLERHVRTHTGERPYECSYCSKAFISKNNLVQHHRLHTVRTNVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -