Lclr009950.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lordiphosa clarofinis
Gene Symbol
-
Assembly
GCA_018904275.1
Location
JAEIGQ010000004.1:645281-647149[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 7.4e-08 3.8e-06 27.2 1.9 1 23 122 144 122 144 0.99
2 18 1.2e-06 6.3e-05 23.3 1.1 1 23 150 172 150 172 0.99
3 18 7.9e-06 0.0004 20.8 4.6 1 23 178 200 178 200 0.98
4 18 6.9e-05 0.0035 17.8 1.0 1 23 206 228 206 228 0.99
5 18 2.1e-05 0.0011 19.4 0.9 1 23 234 256 234 256 0.99
6 18 9.4e-06 0.00048 20.5 7.9 1 23 262 284 262 284 0.99
7 18 9.5e-07 4.8e-05 23.7 1.0 1 23 290 312 290 312 0.99
8 18 2.5e-05 0.0013 19.2 5.9 1 23 318 340 318 340 0.99
9 18 1.1e-06 5.8e-05 23.4 2.6 1 23 346 368 346 368 0.99
10 18 2.7e-07 1.4e-05 25.4 3.3 1 23 374 396 374 396 0.99
11 18 3.4e-06 0.00017 21.9 3.0 1 23 402 424 402 424 0.99
12 18 7.4e-06 0.00038 20.9 4.5 1 23 430 452 430 452 0.98
13 18 1.9e-07 9.5e-06 25.9 3.3 1 23 458 480 458 480 0.99
14 18 3.7e-05 0.0019 18.6 7.2 1 23 486 508 486 508 0.99
15 18 2.6e-07 1.3e-05 25.4 2.3 1 23 514 536 514 536 0.99
16 18 9.1e-05 0.0046 17.4 5.0 1 23 542 564 542 564 0.98
17 18 6.9e-08 3.5e-06 27.2 2.8 1 23 570 592 570 592 0.99
18 18 7.1e-05 0.0036 17.8 6.3 1 23 598 620 598 620 0.99

Sequence Information

Coding Sequence
ATGCATAGCAAAGCCAAACTATGCCGGGCTTGTGAGTCCACTTCGGACGCTGATGTGGACACCAACTGGCAGAATATCTACACTGACTCCAACTTGAAGACACTATTAGAGGAGGTAACTAATCGGATTGTCCAATCTACTGAGGATCACCCTGAATGGATTTGCCCTTCATGCCTGTCAGCGGCAAAAACTGCTTTGAACTTTAAGCGACGATTTGAGAGGAGTCTGCAGTATTTAAACAAGCAGTTGGAGCAGAATGAACCCACATCCAGCCTGGACGGAATTCAGTTCAAGCAAGAGTTTGTCTCGGAAGAAGAAGAAAACGCCGAAAAAGAGGACTTCACTAAGACTAAAAAAGCATCCTACAAATGTCCCATCTGCTCCAAAATGTTCACCCAGAAACACGGTCTTAAAGCTCACCTACGCATCCATACTGGCGAAAGGCCTTTCCAGTGTCCAGAATGCTTGAAATCTTTTTTCCGAAATGGCCAACTAAAGAATCATCTTCTCACGCATACAGGCGAAAAACCCTTCGAATGCTCCCACTGCTCAAAGACCTTTAGCATTAAGAGCTCTCTGAAGCTTCATCTTCGCAAGCATACGGGCGAGAAACTCTTTGAATGTTCCTACTGTTCTATAACCTTTGTTATTAAGCGTAATCTGGATACACATCTACGCACGCATACTGGCGAACGTCCTTATAAGTGTACAGAGTGCACAATGTCTTTTGCCCTACGTGGCACTCTAACAAAACATCTTCTCACTCATACTGTCGAAAGACCCTTCGAATGCTCGCACTGTTCGAAACACTTTAAAAGTAAGGACACTTTGGAAAAACATCGTCGCACACATTCGAGCGAAAGGCCATTCCAGTGTACCGAGTGCTCAATGTCATTTATCACAAAAGGCAATCTAAAGAGTCATCTTCTCACGCATACTGGCGAGAAGGCCTTTAAATGTTCATTCTGTTCAAAGACCTTTAAACGTAAGGGTGAGGTGGAAAAACACCATCGTACACATGATGGCGAACGACCTTTCCAGTGTTCAGAGTGTTCACAATACTTTACCCAAAAAAGCAGTTTGAAGATTCATCTTCGCACACATACGGGCGAAAAACCCTTCCAATGCCCCCTCTGTTCTAAGACTTTTATCAGTAAGAGCCATCTGAAACTACATCTGCGCTCGCATACGGGCGAACGTCCTTACAAGTGTACAGAGTGCTCAAGGTCTTTTACCGCAAGTAGCCATCTAAAGGATCATCTTCTCACGCATACAGGCGAAAAACCCTTCGAATGCTCCCACTGTTCAAAGACCTTTCGCATTAAGAGCTCTCTGAAGATGCATCTTCGCATGCATACGGGCGAGAAACCCTATGAATGTTCCCACTGTTCTAAAACCTTTGTTAATAAGAGCAATCTTAACAGTCATCTTCTCACGCATACTGGCGAAAAGGCCTTTAAATGTTCATTCTGTTCGAAGAACTTTAAACGTAAGAGAGATCTAGAGACACATCATCGTACACATAATGGCGAACGACCTTTCCAGTGTTCAGAGTGCTCACAATCCTTTACCCAAAGAAGTACTCTGAAGATTCATCTTCGCACGCATACGGGCGAAAAACCCTACATATGTTTGCACTGCTCTAATACCTTTGTCAGTAAGAGCCATCTGGAACAACATCTGCGCAAGCATACGGGCGAACGTCCTTACAAGTGTACAGAGTGCTCAAAGTCCTTTAGCCAAAGTAGCAATCTGAAGAGTCATCTTCTTAAGCATACTGTCGAGAAACACTTCGAATGCTCGTACTGCTCGAAACCCTATAAAAGTAAGGCCTGTCTGGAAAAACATCATCGCACGCATACTGGCTAA
Protein Sequence
MHSKAKLCRACESTSDADVDTNWQNIYTDSNLKTLLEEVTNRIVQSTEDHPEWICPSCLSAAKTALNFKRRFERSLQYLNKQLEQNEPTSSLDGIQFKQEFVSEEEENAEKEDFTKTKKASYKCPICSKMFTQKHGLKAHLRIHTGERPFQCPECLKSFFRNGQLKNHLLTHTGEKPFECSHCSKTFSIKSSLKLHLRKHTGEKLFECSYCSITFVIKRNLDTHLRTHTGERPYKCTECTMSFALRGTLTKHLLTHTVERPFECSHCSKHFKSKDTLEKHRRTHSSERPFQCTECSMSFITKGNLKSHLLTHTGEKAFKCSFCSKTFKRKGEVEKHHRTHDGERPFQCSECSQYFTQKSSLKIHLRTHTGEKPFQCPLCSKTFISKSHLKLHLRSHTGERPYKCTECSRSFTASSHLKDHLLTHTGEKPFECSHCSKTFRIKSSLKMHLRMHTGEKPYECSHCSKTFVNKSNLNSHLLTHTGEKAFKCSFCSKNFKRKRDLETHHRTHNGERPFQCSECSQSFTQRSTLKIHLRTHTGEKPYICLHCSNTFVSKSHLEQHLRKHTGERPYKCTECSKSFSQSSNLKSHLLKHTVEKHFECSYCSKPYKSKACLEKHHRTHTG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-