Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.13 2e+02 2.2 0.1 18 32 8 22 4 23 0.82

2 9 0.0019 2.9 8.1 1.6 11 41 100 127 95 129 0.83

3 9 4.6e-05 0.067 13.3 1.2 18 41 135 155 131 156 0.92

4 9 2.1 3e+03 -1.6 0.3 18 33 163 178 162 184 0.74

5 9 0.0038 5.6 7.2 1.1 5 39 179 209 175 213 0.77

6 9 0.00087 1.3 9.2 2.7 18 41 219 239 217 241 0.93

7 9 0.04 59 3.9 4.8 17 39 246 265 239 274 0.86

8 9 0.00017 0.25 11.5 1.7 18 41 277 297 269 298 0.92

9 9 0.015 23 5.2 1.4 18 40 305 324 301 326 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.13	2e+02	2.2	0.1	18	32	8	22	4	23	0.82
2	9	0.0019	2.9	8.1	1.6	11	41	100	127	95	129	0.83
3	9	4.6e-05	0.067	13.3	1.2	18	41	135	155	131	156	0.92
4	9	2.1	3e+03	-1.6	0.3	18	33	163	178	162	184	0.74
5	9	0.0038	5.6	7.2	1.1	5	39	179	209	175	213	0.77
6	9	0.00087	1.3	9.2	2.7	18	41	219	239	217	241	0.93
7	9	0.04	59	3.9	4.8	17	39	246	265	239	274	0.86
8	9	0.00017	0.25	11.5	1.7	18	41	277	297	269	298	0.92
9	9	0.015	23	5.2	1.4	18	40	305	324	301	326	0.89

Coding Sequence: ATGGAACCACCAGGGGCTGAGCAATGCCGCGTTTGCATGTCCAGTTGGTCTAATGGCACCCACACCAACTGGCCAAATATATTCAACGACTCGGACGCCGAACTAGGAGACTTGCTGTTTATAATCAAGGAGGTGACTGGACACGACATTAAACAGTATAAAAATCTACCTGAAAGCATTTGCCCTTCATGCTTGGATGCTGCAAAAACTGCCTTAAATTTTAAGCAACGTTTGGAGAAGAGTCTTGAGCTGTTAAAGCAGAATAAAGAATTAACCAAAAAGAAGTCAGCGCAGTCTCAAACTGATGAGCGACGCTTCGTATGTGTCTATTGCTCCAAATCCTGTGTCTCCAGCAGCAGTCTGAATACTCACCTACGCACTCACACAGGCGAGCGACCCTACGAATGTAACCACTGCTCAAAAACCTTTAGTCTATTAAAAAATCTAAAGGATCACTTGCGCACACATACCGGGGAGCGTCCCTTCAAATGTTCAGATTGCTCAAAAGACTTCACAACCAAGAGCAAACTAACTAATCACCAACGCATTCATACGGGCGAACAACCCTTCGAGTGTCCACATTGCCCGAAAACCTTCACCCATAGAAGCAGTCTGAAGACTCACCTGCTCACTCATACTGGAGCGCGACCATTCGAGTGTACCCATTGTTCAAAATCCTTTGCCCAACACAGCGGTCTGAAGACTCATCTGCGCACTCATACGGGCGAGAAACCATTCGAGTGTTCACATTGCTCGAAAACTTTTGGTGAAAAGTGTAATCTAAAGAGACATCTACTAACTCATTCCGAAGTGATACAGCGACCATACGAGTGTTCCCATTGCTCGAAATCCTTTTCCGACAATAGCAATCTAAAGACTCATCTTCGAACTCATACTGGAGAGCGACCCTATGAATGTTCCCACTGTTTGAAAACTTTTGGGTCTATGAAAAATTTGAATAATCACCTTCGCATTCATACTAAAGTTTAA
Protein Sequence: MEPPGAEQCRVCMSSWSNGTHTNWPNIFNDSDAELGDLLFIIKEVTGHDIKQYKNLPESICPSCLDAAKTALNFKQRLEKSLELLKQNKELTKKKSAQSQTDERRFVCVYCSKSCVSSSSLNTHLRTHTGERPYECNHCSKTFSLLKNLKDHLRTHTGERPFKCSDCSKDFTTKSKLTNHQRIHTGEQPFECPHCPKTFTHRSSLKTHLLTHTGARPFECTHCSKSFAQHSGLKTHLRTHTGEKPFECSHCSKTFGEKCNLKRHLLTHSEVIQRPYECSHCSKSFSDNSNLKTHLRTHTGERPYECSHCLKTFGSMKNLNNHLRIHTKV

Sequence clustering based on sequence similarity using MMseqs2