Lclr012061.1
Basic Information
- Insect
- Lordiphosa clarofinis
- Gene Symbol
- -
- Assembly
- GCA_018904275.1
- Location
- JAEIGQ010000001.1:700213-701427[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.066 97 3.2 0.0 19 29 14 24 7 31 0.82 2 11 6.3e-05 0.092 12.9 0.1 17 41 115 136 111 138 0.93 3 11 0.052 77 3.5 2.9 18 39 144 162 140 169 0.87 4 11 0.012 18 5.6 3.0 18 40 172 191 164 198 0.84 5 11 0.0079 12 6.1 3.6 18 41 200 220 193 222 0.81 6 11 0.012 18 5.5 0.9 18 41 228 248 224 250 0.92 7 11 0.0032 4.8 7.4 4.4 1 41 240 276 240 277 0.87 8 11 0.063 93 3.3 0.3 19 41 285 304 280 306 0.80 9 11 0.011 16 5.7 0.6 18 41 312 332 307 334 0.90 10 11 0.0041 6.1 7.1 1.4 18 40 340 359 335 361 0.92 11 11 0.0014 2 8.6 4.5 1 41 352 388 352 389 0.93
Sequence Information
- Coding Sequence
- ATGGCCTGGAGAGCAAAGAGCGCACAAGTGGCCAAGCCATGCCGCATTTGCATGTCCACTTTGGCAGATGACACCAAGTCCAACTGGCGAAACATATTTACCGACTTCAATGTGGAACAAGGCGGATTCGGTTTGCTGTTTATAATCGAAGAGGTGACTGGACGCTTGGTTAAAACTGATGAGGATCTACCCAAATGTATATGCCCTTCATGCTTGGCAGAGGCACAAACAGCATTTAATTTTAAGCGGCGATTTGAGAGTAGTCTTCAAATGATAAAGCAGCAGGAAGTTAGTGAAAAGGAAGAAATCGAAACTTACTCTTCTTCACATGTCGCTGCACCCATCCAGTGTCCGCAATGCTCCAAGACTTTTAGCCGGAAATCCACTTTAAAGCAACATCTACGTACTCATAGCGGAGAACGGCCCTTTGAATGTTCCTACTGCTCCAAATCCTTTGGCAAAAATGCCTGTCTCAAGAGGCATTTACTTACACACACTGGCGAGCGACCTTTCCAATGTTCCTACTGTTCTAAAACCTTTACCCAAAAGTGCGGTCTTAAGTATCATCTAAGCACTCATACAGCCGAACGACCCTTTGAATGCTTACATTGCTCCAAAACCTTTGTCAATAATGACCATCTAAGTAGACATCTACGCACTCACACAGGCGAACGACCTTTCCAATGTTCGCAGTGTTTAAAAACTTTTACCGACAAAAGCCGTTTAAAGTCTCACCTTCGCACTCATTCGGGGGAACAACCATTTGAATGCATCCACTGCTCCAAAACCTTTGGCGAAATAGGCAATCTTAACAAGCATCTACGTACTCATACTGGTGAGCGACCGTTTGAATGCCCTCAATGTGCGAAATCCTTTGTGAAAAATGATTGCTTAAAGAAACACCTACGCACTCATACGGGCGAAAGACCCTTCGAATGCTCCCATTGCTTGAAAACATTCAGTTTAATTGGAAATCTAAACAGTCACATACGCACACATACTGGGGAGCGACCTTTTGAATGCTCCCATTGCTCAAAAACCTTTGTCGAAAAAAGCAAACTAAAGGCTCATCTACGCATTCATACGGGCGAGCAACCATTTGAATGTTCCCACTGCTCGAGAACCTTTACCCATAGAAGCAGTCTTAAGGCTCACCTGCGCTCACATGATAAAGAATCAAATCTTGAAAAGATTGCTGTAAACGAAGACACTTAA
- Protein Sequence
- MAWRAKSAQVAKPCRICMSTLADDTKSNWRNIFTDFNVEQGGFGLLFIIEEVTGRLVKTDEDLPKCICPSCLAEAQTAFNFKRRFESSLQMIKQQEVSEKEEIETYSSSHVAAPIQCPQCSKTFSRKSTLKQHLRTHSGERPFECSYCSKSFGKNACLKRHLLTHTGERPFQCSYCSKTFTQKCGLKYHLSTHTAERPFECLHCSKTFVNNDHLSRHLRTHTGERPFQCSQCLKTFTDKSRLKSHLRTHSGEQPFECIHCSKTFGEIGNLNKHLRTHTGERPFECPQCAKSFVKNDCLKKHLRTHTGERPFECSHCLKTFSLIGNLNSHIRTHTGERPFECSHCSKTFVEKSKLKAHLRIHTGEQPFECSHCSRTFTHRSSLKAHLRSHDKESNLEKIAVNEDT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00915517;
- 90% Identity
- iTF_00915517;
- 80% Identity
- iTF_00915517;