Lclr005603.1
Basic Information
- Insect
- Lordiphosa clarofinis
- Gene Symbol
- -
- Assembly
- GCA_018904275.1
- Location
- JAEIGQ010000029.1:1341945-1343550[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 9.3e-17 2.2e-13 49.7 0.0 2 45 344 387 343 387 0.95 2 3 0.016 39 4.2 0.0 27 37 416 426 412 431 0.89 3 3 7.9e-20 1.9e-16 59.6 0.0 2 42 453 493 452 495 0.95
Sequence Information
- Coding Sequence
- ATGAATAACCTAAAATGGATGGGCCACTCGGCGACCATAATGGACATACAACGCTCTCTGCGCGACGACAGCGAAACCTGCGAAGTTATCTTGGCGGCCAAGGATGGCATCAGTGTTCGCGCCCATCTCTTCGTGCTGAGCACTTGCAGCGATCTGATGCGAAATCTTCTGGTGGATGTGCCGCCCGGTCAGGAAGCCACCATTATTTTGCCCGATATACGCGGCGAGCTGCTGGAGACGATGTTGTCGTTCATTTACATGGGCGAGACGAGTTTGCCCTCGGCCTCGTTGACGGAATTTCTGGAAGCCATTAATCTGTTGGGCATCAAGTCGGCCATTAGCTTCGAGTGTAATCCCACCTCACAGCTGAACACCTCGAATGTGGAGCAAGTGGTTGCTGTGGAAGCGGCCAAGTCCATAAGTGGATTGCAAATCGCTTCGACTGAACTAATGGAGGACGAAGAAGAGGCGGCAGTTCAGACCCAGGCAACGGAAAATGCGGTAACTGCAAATCCTCAGCCGCAACAGCCGACACCACCCGGCCGTGACCTGGAGTTTCTGGACATGTACAACGAACAGCCGAAAATTACCTATTCCATTGAGCATATGGGCGGCAACACCAGTGGCAATCAATATATACTCACCGAGAACACGGGCACTTTTACCATCACCCAATCAGCAGCGACGCCCATGTCCAAGTTGGACTCCTCCCATGTGGATATGGCTGAAGATGATGACGCCGAAGCTGATGTCACCGATGAGGTAGACGAGCAGGAGTCGCAACTCATCGAAGAGGAATATGTGGCGGCTGACCCCTTGGTCGATATGCAAACAGATGCAGAAATGGGAGAAGGAGAAAATGATGAGGATGATGAGGCAGAAGAAGATATGGAAATGGACATAAAAGCCAATCTGGTGCACGCCACAAAAGTAAAAGCCCGACGTCCGGCCCCTGCCAAGGTCCTGAAGCGACAATCGGCCAAGCAGCTGCAATTCGTGGCCCTCAAGAGCGGGCCCAAGGATGGCATCAACGACGCCCTGGAATTGGCCGCCGAAGCTGTGCTCAACGAAGGCCTCAGTCTGCAAAAGGCCGCCGATCGTTTTGATGTATCCAAAACCGTTCTTTGGCGTCGCGTGCGCTCTAATCCTGAATACTTGCGCAGCAACCGCGAGAAGCCCTCTCTGTCTGAGGCCTATGAGCGTCTGAAGAGTGGCGACTCGCTTAAGAGCATAAGCCAGGATCTGAATATACCCATGTCCACACTGCACCGTCATAAGGTACGCCTCGCTGCTCAAGGCCGTTTGCCCGATTTTGTAGCCTGCCGGCGACGCGATAGCACACCCAAGGATGAGTTGCGCGATAAGCTGGCCAAGGCCGTGCATGCGTGCATCAACGAGGGCATGTCCCAGAATCATGCGGCCAATCTGTTCGAGATACCCAAGAGCACACTGTGGCGCCACCTACAGCGTCGTGTAGCCGCAACCGAACGCAAAGTCAAATTGGAGCAACATGATGTTGAGGAAGAGGATCTTCTTAACTAG
- Protein Sequence
- MNNLKWMGHSATIMDIQRSLRDDSETCEVILAAKDGISVRAHLFVLSTCSDLMRNLLVDVPPGQEATIILPDIRGELLETMLSFIYMGETSLPSASLTEFLEAINLLGIKSAISFECNPTSQLNTSNVEQVVAVEAAKSISGLQIASTELMEDEEEAAVQTQATENAVTANPQPQQPTPPGRDLEFLDMYNEQPKITYSIEHMGGNTSGNQYILTENTGTFTITQSAATPMSKLDSSHVDMAEDDDAEADVTDEVDEQESQLIEEEYVAADPLVDMQTDAEMGEGENDEDDEAEEDMEMDIKANLVHATKVKARRPAPAKVLKRQSAKQLQFVALKSGPKDGINDALELAAEAVLNEGLSLQKAADRFDVSKTVLWRRVRSNPEYLRSNREKPSLSEAYERLKSGDSLKSISQDLNIPMSTLHRHKVRLAAQGRLPDFVACRRRDSTPKDELRDKLAKAVHACINEGMSQNHAANLFEIPKSTLWRHLQRRVAATERKVKLEQHDVEEEDLLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00917324;
- 90% Identity
- iTF_00915460;
- 80% Identity
- iTF_00915460;