Basic Information

Insect: Lordiphosa andalusiaca
Gene Symbol: SCRT1_3
Assembly: GCA_035044965.1
Location: JAWNNM010000702.1:2324282-2329038[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 2.8e-07 1.8e-05 25.2 1.5 1 23 453 475 453 475 0.99

2 5 0.00086 0.054 14.2 0.3 2 23 485 506 484 506 0.97

3 5 1.9e-05 0.0012 19.4 0.4 1 23 510 532 510 532 0.97

4 5 6.4e-08 4e-06 27.2 0.6 3 23 540 560 538 560 0.98

5 5 9.1e-05 0.0057 17.3 2.2 1 21 566 586 566 587 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	2.8e-07	1.8e-05	25.2	1.5	1	23	453	475	453	475	0.99
2	5	0.00086	0.054	14.2	0.3	2	23	485	506	484	506	0.97
3	5	1.9e-05	0.0012	19.4	0.4	1	23	510	532	510	532	0.97
4	5	6.4e-08	4e-06	27.2	0.6	3	23	540	560	538	560	0.98
5	5	9.1e-05	0.0057	17.3	2.2	1	21	566	586	566	587	0.94

Sequence Information

Coding Sequence: ATGCCACGCTGTCTGATAGCCAAGAAATGGAAGGCCTATCCCTGGCTGGATCGTACCGAGGACAatgcacagcagcaacagcaacagcagcaacagcaacagcagcagcaggcgacAAATGCATCCAACACTTCCAGAGATGAGCCCAGTCTCAAGTCGCGTCGCTCCACActcgatgatgatgaggagaTCGATGTCGTCGGCGATAAGTATTTGACCAAATTGGAAAAGCAACGCACAATAATTGCCGCCTCGGCGGATAcgaaaacaacagcaacagcagcagtagcagaagccacaaacagcaacaacgagagcacaacagcaaccacGGCCAAGTGCTGGGGACCCAGCTCACCCACAGCGGGCACAACGGCTCCTAGTCCACCGCCCCACTCGCCGGAGGCAGCGACGCGAATAGCCAGCAATGTTTACAACGACTACACCCGCGAATTGTCCCCATTGCATTACACTGCGTACCTGCCCAGAATGGAGAGCGAAATTACGGTTATACGCGCTGCTGCCACGGCGCTGGTAGCGGCCGCCTCCACCAACAGTGCGGGAGAGCAACAGCATCTGGCCGCATATCAGACACCGCCCTCATCAACCACATCGTCGCCTTCGTGCTCGCCCAGCGGAGCTGGTCACGGCGATCGCTACAGTCCCCTGGCGGGAGCGATGCACATCAAAACGGAGACAATGGGTGAACGGAAATGCTTTAGCAGCACGGGTGCCACCCTATCGCTGCCGCCCAAAAAGAAAGACATCTATAGGCCTTACTCGTTGGACGACAAGCCAGTGGTTGTCCAGGGCTATCGCAGACGTGTGCCGGCCGAGGAGGATCTGCATGCAGCTCATGCCATACTCGACCTGAGCGCCTCGACCGCATTCCACCCGCCCACACAGCCCCATCAGCTGCATCAGCACTTACCTCTGCAACAGCAGCACGCTCTGGCCCACACCCACTCCCACTCGCACGTTCCAGCATTGGAGACGCATGCGCATCTGCGTAGCACGTCATCGATTGCCGAATTGGCTGCTGCAGCCAGCGTGGTGAACGAACAACGCCCCTTGAGCAATGCCTCCAGTGCCAGTAGCCAGCATCATCATGTCATCATGCCCAGCAGTCCGGCCAGCAGTAACTCCAGCGGTAGTGTGCAAAACGAGAATAGCAACACCACCAATACCAACCAGGCGCCGGATGACTGCgatggcgaccgtgacggTGGGTCAACGCAGGCGGCCAAGACCGTTGCCTACACCTATGAGGCCTTCTTTGTCAGCGACGGACGGTCCAAGCGCAAACACGTGGCCGATCCGGCGGCCATTGTGGTGCAGGATCAACAGAAGACCAAATACACCTGCTCCGAGTGCGGCAAACAGTATGCCACCTCCAGCAACCTGTCGCGTCACAAGCAGACGCATCGTTCCTTGGACTCGCAGTCGGCCAAGAAGTGTCACACGTGCGGCAAGGCCTATGTATCCATGCCAGCGCTGGCCATGCACGTTCTGACGCACAAATTGTCGCACAGCTGCGGCGTTTGCGGCAAACTGTTCTCGCGACCCTGGCTGCTGCAGGGACATCTGCGTTCGCACACGGGCGAGAAACCCTACGGCTGTGCGCACTGCGGCAAGGCATTCGCGGATCGGTCCAACCTGCGGGCACACATGCAAACGCACTCGGTGGACAAGAATTTTGAGTGCAAACGCTGTCACAAGACCTTCGCATTGAAATCGTACCTCAACAAGCATCTGGAGTCCGCCTGCCTTAAGGATGAGGAGGAGCTGATGATGGCCATGTCGTTGCATGGCCATAGTGGGGATAGCAATAGCGAGAGTGGAGCCAGTTTGGCGTCGCCCACGCACGAGTTCATGGAGCGGGTGAAGGTGGAGGTTGGTGGTGGGATGGCAACAGCAGCCGGCGGACCGACCTATGCCATGTAA
Protein Sequence: MPRCLIAKKWKAYPWLDRTEDNAQQQQQQQQQQQQQQATNASNTSRDEPSLKSRRSTLDDDEEIDVVGDKYLTKLEKQRTIIAASADTKTTATAAVAEATNSNNESTTATTAKCWGPSSPTAGTTAPSPPPHSPEAATRIASNVYNDYTRELSPLHYTAYLPRMESEITVIRAAATALVAAASTNSAGEQQHLAAYQTPPSSTTSSPSCSPSGAGHGDRYSPLAGAMHIKTETMGERKCFSSTGATLSLPPKKKDIYRPYSLDDKPVVVQGYRRRVPAEEDLHAAHAILDLSASTAFHPPTQPHQLHQHLPLQQQHALAHTHSHSHVPALETHAHLRSTSSIAELAAAASVVNEQRPLSNASSASSQHHHVIMPSSPASSNSSGSVQNENSNTTNTNQAPDDCDGDRDGGSTQAAKTVAYTYEAFFVSDGRSKRKHVADPAAIVVQDQQKTKYTCSECGKQYATSSNLSRHKQTHRSLDSQSAKKCHTCGKAYVSMPALAMHVLTHKLSHSCGVCGKLFSRPWLLQGHLRSHTGEKPYGCAHCGKAFADRSNLRAHMQTHSVDKNFECKRCHKTFALKSYLNKHLESACLKDEEELMMAMSLHGHSGDSNSESGASLASPTHEFMERVKVEVGGGMATAAGGPTYAM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00918500; iTF_00915685; iTF_00920135; iTF_00917522; iTF_00919350; iTF_00916624;
90% Identity: iTF_00915685;
80% Identity: -