Basic Information

Insect: Lordiphosa andalusiaca
Gene Symbol: -
Assembly: GCA_035044965.1
Location: JAWNNM010002398.1:44152-46080[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.57 36 5.3 1.5 1 21 126 146 126 147 0.93

2 10 0.0002 0.012 16.2 2.6 2 23 176 197 175 197 0.98

3 10 0.00034 0.021 15.5 0.6 1 23 223 244 223 244 0.97

4 10 0.00069 0.043 14.5 1.4 1 23 253 275 253 275 0.96

5 10 0.013 0.81 10.5 0.4 1 23 301 323 301 323 0.97

6 10 1.6e-07 9.8e-06 26.0 0.5 1 23 329 351 329 351 0.98

7 10 0.00026 0.016 15.8 5.5 1 23 357 379 357 379 0.98

8 10 1.6e-05 0.001 19.7 0.7 1 23 385 407 385 407 0.98

9 10 0.00024 0.015 16.0 0.3 1 23 411 433 411 434 0.95

10 10 0.00041 0.026 15.2 0.4 1 23 457 480 457 480 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.57	36	5.3	1.5	1	21	126	146	126	147	0.93
2	10	0.0002	0.012	16.2	2.6	2	23	176	197	175	197	0.98
3	10	0.00034	0.021	15.5	0.6	1	23	223	244	223	244	0.97
4	10	0.00069	0.043	14.5	1.4	1	23	253	275	253	275	0.96
5	10	0.013	0.81	10.5	0.4	1	23	301	323	301	323	0.97
6	10	1.6e-07	9.8e-06	26.0	0.5	1	23	329	351	329	351	0.98
7	10	0.00026	0.016	15.8	5.5	1	23	357	379	357	379	0.98
8	10	1.6e-05	0.001	19.7	0.7	1	23	385	407	385	407	0.98
9	10	0.00024	0.015	16.0	0.3	1	23	411	433	411	434	0.95
10	10	0.00041	0.026	15.2	0.4	1	23	457	480	457	480	0.96

Sequence Information

Coding Sequence: ATGTCTGGTGAGTTGTCTCCAAGTTGCTCCAGAGCCCAAACGTCTTATTGCAGCAAATCATTTCCAGAGTTTTACTTGGAGGAAACTTCAATCGGCTCGTCTGAGCACGTGGAGGCCACTGACGAGGATTACTTTATAGCAGATACCACCACCCAGGAACTGTATTACCATTGTGAAAGCTGTGGCAATCACTATGAGTGCATAGAGGCGTATTCCAAGGAGCATAGTGGGCAGCCCGGTAGCTGTGGTGTTCCTGAAGTTGAAGACTCTATGGACCAAGAGCAGGAGATTTTAGAAGCAGATGCGCCGCTCTGGGATGTAATAGAGGAAGAGCCAGCGGCCACGCCTGAGGAAGAGGAAGTGGAACAGGAGCGATATTTTTGCTATGATTGTCATAGCATTTTCGAGAATCGTGACACTGCCGAGGAGCACATATGTTCCCAAGTAGAGGCTGCCACAGCCGAACCCAAGAAATCCACACGACGCAACGCGCTCCCACCAGCAGAAGACGCCTCATTCTTCACCCAATGCGAGATATGCAATACCAAATTCAACTCGTCCAAATCCCTAAAGTTTCACATGCGTATGCACGGGCAAGTGGTGACCAAGAGCATACAGGATGCGCTGCCCGTGGGAGCCCATCAGCAGTACAGCGAACTGGATCAGTTCTACTGTGAGATCTGCAACAAGAGCTTTGATGAGAATCTTCTGGAGGTGCACAAACAAATGCATCAGCAGCAGTCCAGCAAGGAGCAATACCTGTGCAGCACTTGTAATCGCCAGTTTGACAATCTTACCAACTATGAACTGCATTTGAAAATGCATGAGAAGCAATcaacggcgacgacgacggcaGGCAAACGCACCTCACCCCCGGCTGGGAATAAGGAGAAACCAGGCTTTGCCTGTCAGTACTGCGAGCGAGTCTTCCTACGTCCCTATGAGAAGGTGAAACACGAACGTGTTCATACGGGCGAGAAACCCTACGCCTGCGAGGTGTGCGGCAAAACGTTTCGTGTCTCCTACTCTCTCACCCTGCATCTACGCACGCACACCACCATCAGGCCATATGTGTGCACCATTTGCAATAAGCGCTTCAAGTCGCATCAAGTATATGCCCATCATTTGCGGACTCACAGCTCGGATCGTGAATATGCCTGTGATATGTGCCCCAAGACATTTCGCACCTCTGTTCAGTTGTATGGCCACAAGAATACCCATACCAAACCGTACAACTGTGCCGTTTGCAATCGTCCTTTTGCCTCCTTGTATGCTGTGAAAGCGCATATGCTGAATCATCATGAAAGAGGAACCGCCACCAATAATACCTCGGCCAGTTCGGCGAAGCCAAGCCAAatactaaataaattttgttgtttgatcTGTGGCGCCGAATATGCGCGCCTCTTTGCCCTGCGCCAGCATATGAACTCAGCCCATGCCGTGGAAGTTCCTCCTGTGGAGCAGCAAGTAGTGGAGAACGTTGGCAGTTTAACCGATGACACAGAGGCAGCTGTGCTCCTAGCAGCCGCTGAGGCAGATGCTGCTTATATACAGGCGGTTGTCAACGATGTGGACATAGGCACTGTGCCCAGCTATGGCGAGGCTACAGAGTTTCAGTTACACAGCGAAGAGATCATTACGGATTGGCTCAAGTGA
Protein Sequence: MSGELSPSCSRAQTSYCSKSFPEFYLEETSIGSSEHVEATDEDYFIADTTTQELYYHCESCGNHYECIEAYSKEHSGQPGSCGVPEVEDSMDQEQEILEADAPLWDVIEEEPAATPEEEEVEQERYFCYDCHSIFENRDTAEEHICSQVEAATAEPKKSTRRNALPPAEDASFFTQCEICNTKFNSSKSLKFHMRMHGQVVTKSIQDALPVGAHQQYSELDQFYCEICNKSFDENLLEVHKQMHQQQSSKEQYLCSTCNRQFDNLTNYELHLKMHEKQSTATTTAGKRTSPPAGNKEKPGFACQYCERVFLRPYEKVKHERVHTGEKPYACEVCGKTFRVSYSLTLHLRTHTTIRPYVCTICNKRFKSHQVYAHHLRTHSSDREYACDMCPKTFRTSVQLYGHKNTHTKPYNCAVCNRPFASLYAVKAHMLNHHERGTATNNTSASSAKPSQILNKFCCLICGAEYARLFALRQHMNSAHAVEVPPVEQQVVENVGSLTDDTEAAVLLAAAEADAAYIQAVVNDVDIGTVPSYGEATEFQLHSEEIITDWLK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00916548;
90% Identity: iTF_00917452;
80% Identity: -