Basic Information

Insect: Lordiphosa andalusiaca
Gene Symbol: -
Assembly: GCA_035044965.1
Location: JAWNNM010002216.1:622323-624025[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.012 0.73 10.7 0.5 1 17 160 176 160 177 0.88

2 9 2.4e-05 0.0015 19.1 3.3 3 23 291 312 290 312 0.98

3 9 7.9e-05 0.0049 17.5 8.0 1 23 317 340 317 340 0.96

4 9 8.1e-05 0.0051 17.5 1.2 1 23 346 368 346 368 0.98

5 9 2.9e-05 0.0018 18.9 5.1 1 23 374 396 374 396 0.96

6 9 0.0045 0.28 12.0 0.0 1 23 402 424 402 424 0.98

7 9 0.0029 0.18 12.6 6.4 1 19 430 448 430 448 0.99

8 9 8.2e-06 0.00052 20.6 1.9 1 23 459 481 459 481 0.99

9 9 1.3e-07 8e-06 26.3 1.7 2 23 489 510 488 510 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.012	0.73	10.7	0.5	1	17	160	176	160	177	0.88
2	9	2.4e-05	0.0015	19.1	3.3	3	23	291	312	290	312	0.98
3	9	7.9e-05	0.0049	17.5	8.0	1	23	317	340	317	340	0.96
4	9	8.1e-05	0.0051	17.5	1.2	1	23	346	368	346	368	0.98
5	9	2.9e-05	0.0018	18.9	5.1	1	23	374	396	374	396	0.96
6	9	0.0045	0.28	12.0	0.0	1	23	402	424	402	424	0.98
7	9	0.0029	0.18	12.6	6.4	1	19	430	448	430	448	0.99
8	9	8.2e-06	0.00052	20.6	1.9	1	23	459	481	459	481	0.99
9	9	1.3e-07	8e-06	26.3	1.7	2	23	489	510	488	510	0.98

Sequence Information

Coding Sequence: ATGCTGCCAATTACTCTCGCCACGGTTGATAACTTTTGCTGTTCCTGCCTGCAAGAGTTGCCACAACCCACAACGAGTGACCACAAAAAGAAGGAACCGCCGCCACAGCATGACCTgaagcagcagccacaaaTTCTCCGGGCCTGGCAAGCCTTGACGGAGCAgttacagacagacagtcccACCCAGAGTTGCAATTCGTGTAATTCCTGctttacaaaattgcagatcTTTTGCAGCTTTGGACAACTGGCCAATTGCACAGCGATTGCTTTGAGGGAATTGATAAACGAAAACCAGGAATTGACCAGCGGCACCAAGTATGGCTTAATATGTGTgacatgttttaaaaatatgtcccAATCACAAGTGGGCCCAGAGCTAAAACTATCAGCTGAAGTGCAGCAGCTATGGGAGCTGATGACGGGCATTAAGCTGGAGCAGGAAGCTGAGATATGCCAGCAAATGTTGCCCAAGCACATTTGCAAATATTGTGGACAAAAGTTCAAGACATTTGTGGAACTAATGAAGCTGGGCAAGGAGAGTCAACATGATATCAAGTCCATGTTGTATGAGGCAGAGGATGGGGCAGAGGAAAGCCTCCAGGAGGATGTGAAGACAATAAGCTTTGAGGCAGCAGAACCACAGCTGGAAACGCTGACAAATCAGGTGATCAAAGTGGAAGTTACTGCAGAAATTCTAGAACTGGAGGTCTGGAGCTCTCCCGCAGACTTCAAAGGCGACACAGAGCTGGCCAGCGGGTATACCAGTGAGTCTGAAATGCCAAATAGCCCCCACACTGATCCCTTCGAAACCAACGACTGCGCTTCCAATCCCCTGCCCACACCTACATCTACCGACTTTTGGCTCTGCACCACCTGCCATAAGGAATACCCCACCAAATCTCAGCTACAACGACATACACGTCGTGTACATGCCCAGGCACAACACAAATGTTCCTACTGTCAGCGGGAATTCAAGCGTAAACATCATCTCACCGATCATATAAAGTTGGTGCACGAACGCCTGCGGCCCTTTAAATGTCATCTATGTGAACGTTCATTTGGTCTGCCACGCACCCTGCGTATCCACATGATGGGCCACACCAATGAACGACCATTTCACTGTGATATTTGTCATAAAACGTTTCGTCAGAAAAACGAACTGAACGTCCATCTGACCAATCATGCTTCAGATTCACGATTTCGTTGTCCCGTTTGTTCGCGTGGTCAGGCCAGTCAAGAGGATTTGGAGGCACACCTGTTGCGGCATACCAATAAAGAGGGTTACCAATGCACCAAATGTGGTCGCAAATTTACTAAATTATGTCACTTGAAAAATCATGATAGTGCGGTGCATCTAAAGTTGCGTCCATTCAAATGTGAGCAATGTGAACGCTCATTTGCGGCACGGAAAACCCTTCAAACACACCAACGGACGCACAGCAGCGAGTCTCCCCACATACAATGTGATATTTGTCAAAAGAACTTTCGGACGCGAGGCAACTTTCTGCGTCATATGCGGACACACCAATTGGCCGAACAAGAGGAGAAGGAGTTCTTTAAGGAACATGTGGAGCAAGTGTGA
Protein Sequence: MLPITLATVDNFCCSCLQELPQPTTSDHKKKEPPPQHDLKQQPQILRAWQALTEQLQTDSPTQSCNSCNSCFTKLQIFCSFGQLANCTAIALRELINENQELTSGTKYGLICVTCFKNMSQSQVGPELKLSAEVQQLWELMTGIKLEQEAEICQQMLPKHICKYCGQKFKTFVELMKLGKESQHDIKSMLYEAEDGAEESLQEDVKTISFEAAEPQLETLTNQVIKVEVTAEILELEVWSSPADFKGDTELASGYTSESEMPNSPHTDPFETNDCASNPLPTPTSTDFWLCTTCHKEYPTKSQLQRHTRRVHAQAQHKCSYCQREFKRKHHLTDHIKLVHERLRPFKCHLCERSFGLPRTLRIHMMGHTNERPFHCDICHKTFRQKNELNVHLTNHASDSRFRCPVCSRGQASQEDLEAHLLRHTNKEGYQCTKCGRKFTKLCHLKNHDSAVHLKLRPFKCEQCERSFAARKTLQTHQRTHSSESPHIQCDICQKNFRTRGNFLRHMRTHQLAEQEEKEFFKEHVEQV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00917486;
90% Identity: -
80% Identity: -