Land016552.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lordiphosa andalusiaca
Gene Symbol
-
Assembly
GCA_035044965.1
Location
JAWNNM010003214.1:233686-236462[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 3.4e-06 0.00021 21.8 1.8 1 23 176 198 176 198 0.98
2 16 0.0027 0.17 12.7 0.2 2 23 230 251 229 251 0.96
3 16 0.00019 0.012 16.3 1.7 1 23 334 357 334 357 0.97
4 16 0.076 4.8 8.1 0.5 1 19 364 382 364 385 0.93
5 16 0.084 5.2 8.0 6.3 1 23 394 416 394 416 0.95
6 16 1.5e-05 0.00097 19.7 1.1 1 23 423 446 423 446 0.96
7 16 0.00012 0.0072 17.0 1.5 2 23 454 475 453 475 0.96
8 16 0.0019 0.12 13.2 0.3 3 21 503 521 501 522 0.93
9 16 0.0054 0.34 11.7 4.9 1 23 569 592 569 592 0.98
10 16 0.069 4.3 8.2 1.7 1 23 629 652 629 652 0.94
11 16 0.00037 0.023 15.4 0.9 2 23 671 693 670 693 0.94
12 16 0.0012 0.078 13.7 1.1 1 23 707 729 707 729 0.95
13 16 6.1e-05 0.0038 17.8 0.6 1 23 735 757 735 757 0.99
14 16 4.1e-07 2.5e-05 24.7 2.6 1 23 763 785 763 785 0.98
15 16 0.0014 0.089 13.5 6.3 1 23 791 813 791 813 0.97
16 16 4.5e-05 0.0028 18.3 0.6 1 23 819 843 819 843 0.90

Sequence Information

Coding Sequence
ATGAAAATACCCGTTGTGTGTCGCACTTGCGATGCAAGTCCCAGCAGAGCGGATAGACTGTTTAATCTAAACACGCCCagcaaaaagtatgcaaacaaATCACTGGCGGATATCCTCAGCGAACTGACGGACATTGATCTGCAAGCACCCTTTGCTGATAAATTGCCACAATGCCTGTGCATCAGTTGCTTTAAAAGATTGCTGTCCGCCTTTGAATATGTGAAACAGGCTTTGACTGCCCATGAACTGCTAATGAAGCATCTGAAGAAGGCGGCATCTAACAGCGATTGCTTGGAAGAGAAGCCCATGGAGCTTAATGCTGAGTTACCGTTGGAGGTTAAAATGGAACTAGAAGATGCTGAAGATGTGGCACAAAATGAGTGTCTTAGAGGCAAGAGGGCTACAGTAGATCCCTTCAAGCAGGAGCCGAAAAACGCAGTGGACTCTGTCACAGCAGAATCTGAGACGGATGAGGAAGTcCTAACAACGCGTCATCAAAGCCACCCCAAGAACCACAAGCGTACCCATCAGTGCACCCAGTGCTCTAAAATCTTTAATCGTGCTGGCAACTTAAGGCAGCATCTGAAAGTTCATGCGGATCCCAAACCTTCGGCTAGTATCAGTGAGCACAAAAAGGCCAAGGCGATTGATCTCAATCTGTGCAAGCCCCATGGATGCAAGCTTATCGAGTGCCTGATATGTCAGAGTCAATTCAATAGAATAGCTGATCTTCGACGGCATATGATAAATCATACAGAAGTTGATACTTTAGAAGGGCATGCCAATGCTGAACTCTTCTACCCCGATGTCAAGCATGTCGACGCAGCACAATTAAAGCAATTAATCTGCAAGGACTTGTCCAGTGGTCACTATCAGCGATTTTACTCCATAACCAATCAGTCTGGTTATGAGTTAGATATGGACAGCTCGGAGACGGAGAGCGAGACAGAAACGGAGGAGGAACAGCAATGTTTGACAAGCAAATTATGCCCCACCAAGTATGAATGTGAGCTGTGCCAGCAGAAATATGCCAGAAAGTATCAACTTTACGAGCACCAGCGACAGTCACATGCCTGGCTAGAGGCTCCCCATGTGTGTGGTCGTTGTGATGCTCGATTTGTCAGCCTGCAGCTACTGAGACACCACAATGAATCACAGTGTCGGAATGCACAGAAACGTTTCCTTTGCCACAAATGTCCGCTGCGTTTTCGTTGGAAACACAATCTAAGGACTCATTTTCGGGAGCACCGTGTTATGAACCAAATCCACGAGTGTCCGGACTGCAAACGTGTGTTTGATAAAAAGAAGTCACTTACTGTCCACCTGTTGAGTGTGCATGCGGAAGAATCTAATGTACTGCCTTGCCAGTGGTGTACACGCAAGTTCTATCGTCGGGACTATTTGGTCAAACATCTGAAACGTCATGGCTTGCGAGAACAGGACCTTCCGCTGGCCGAAACCCTTATAGCAGCCACCTCCCAGCCCCATGGAATGAAAAGCATTAACTGTAGGATTTGTAATCTTAAATTCACACGCATTCACGAATTGCGTGCTCACATACAGCTGGATCTTAAACTACATCCAAATTCCGAATCCTTAAGCAACTATTCTATTACTAATAGAACTGGTTTTGAGCTGCAGCTAAACGATTCGGAGACGGATGATGACATGCACTCGATTATGGAAACGGGCAACCGTGTGTCATATAAATGTGAACTCTGTAGTGTACAGTGTCGGCGCCAGCATGAAATGATTCAACATCAGCGTACCATGCATTCGTTTGACAAGATGCCGCATGAGTGTGACAAGTGTATCTTCAAGTGTGTGTCGAAGAGCATCCTGGAACATCATCGTCTAGCGCAATGCCACAACTTGGAGAAAAAACATGCGTGCAGTCATTGCAGCTACAAATTCATGTGGCCTGAAAATTTGGAGCAACACCTACAGCTGCTGCATAGCCCGGGCAAGACAACTATAAGCCAAGAGAAGGTGGAGGCCGTGTCTGTGCTCCCATGTCCACACTGTGATCGCACCTATCAACTGAAATCAAGGCTCAACAATCATATACGGGATGTTCATGAGCATGGCGATCGCAAGCGTAAGGAGGCCCTTAAACAGTTCCTCTGTTCGCTGTGTGGTTGTGAGAGCAAATCGGCTGCCAGCCTGGTGACTCATATGCGTCGCCATACCGGGGAGAAACCATTTAAATGTGATTTCTGTGAAATGGCCTTTCCCCGCCGCTCGGATATGATATCGCATCGTCGCATACACACAGGAGAGAAGAACTTTCACTGCACGGTCTGTGGCAAAGATTTTGCACGTTCCGACAAGCTGAAGCGTCACATGCTGACGCACAGCGGTTTGAGACCGCACTCGTGCAACTATTGTGAGAAGAGCTATCGACATACCAAGGATCTGAAGTTGCATCTGCAGCAGCACACGGGCGAGTGTCCTTTTATTTGTGGCACTTGCGGTGAAAAGTTCATACAGAGCAGCACTCTAGAGAAGCATCGCATGATGCGACGGCATTTTGATGAAGTGGAGACGGCACCGAGTTAG
Protein Sequence
MKIPVVCRTCDASPSRADRLFNLNTPSKKYANKSLADILSELTDIDLQAPFADKLPQCLCISCFKRLLSAFEYVKQALTAHELLMKHLKKAASNSDCLEEKPMELNAELPLEVKMELEDAEDVAQNECLRGKRATVDPFKQEPKNAVDSVTAESETDEEVLTTRHQSHPKNHKRTHQCTQCSKIFNRAGNLRQHLKVHADPKPSASISEHKKAKAIDLNLCKPHGCKLIECLICQSQFNRIADLRRHMINHTEVDTLEGHANAELFYPDVKHVDAAQLKQLICKDLSSGHYQRFYSITNQSGYELDMDSSETESETETEEEQQCLTSKLCPTKYECELCQQKYARKYQLYEHQRQSHAWLEAPHVCGRCDARFVSLQLLRHHNESQCRNAQKRFLCHKCPLRFRWKHNLRTHFREHRVMNQIHECPDCKRVFDKKKSLTVHLLSVHAEESNVLPCQWCTRKFYRRDYLVKHLKRHGLREQDLPLAETLIAATSQPHGMKSINCRICNLKFTRIHELRAHIQLDLKLHPNSESLSNYSITNRTGFELQLNDSETDDDMHSIMETGNRVSYKCELCSVQCRRQHEMIQHQRTMHSFDKMPHECDKCIFKCVSKSILEHHRLAQCHNLEKKHACSHCSYKFMWPENLEQHLQLLHSPGKTTISQEKVEAVSVLPCPHCDRTYQLKSRLNNHIRDVHEHGDRKRKEALKQFLCSLCGCESKSAASLVTHMRRHTGEKPFKCDFCEMAFPRRSDMISHRRIHTGEKNFHCTVCGKDFARSDKLKRHMLTHSGLRPHSCNYCEKSYRHTKDLKLHLQQHTGECPFICGTCGEKFIQSSTLEKHRMMRRHFDEVETAPS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00917387; iTF_00916445;
90% Identity
iTF_00917387;
80% Identity
-