Land013090.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lordiphosa andalusiaca
Gene Symbol
-
Assembly
GCA_035044965.1
Location
JAWNNM010002547.1:2124934-2126577[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.00046 0.029 15.1 0.4 3 23 181 201 180 201 0.98
2 12 3.1e-06 0.00019 21.9 1.8 3 23 211 231 209 231 0.96
3 12 0.00033 0.02 15.6 0.8 1 23 237 259 237 259 0.92
4 12 1.5e-05 0.00091 19.8 6.3 1 23 265 287 265 287 0.98
5 12 7e-07 4.4e-05 24.0 0.4 1 23 293 315 293 315 0.98
6 12 4.2e-06 0.00026 21.5 1.6 1 23 321 343 321 343 0.98
7 12 7.5e-07 4.7e-05 23.9 2.7 1 23 349 371 349 371 0.99
8 12 3.5e-06 0.00022 21.7 7.2 1 23 377 399 377 399 0.99
9 12 2.3e-07 1.4e-05 25.5 0.3 1 23 405 427 405 427 0.97
10 12 1.1e-05 0.00069 20.2 3.2 1 23 435 457 435 457 0.99
11 12 0.0032 0.2 12.4 4.2 1 23 468 490 468 490 0.97
12 12 3.9e-06 0.00024 21.6 4.5 1 23 495 517 495 517 0.99

Sequence Information

Coding Sequence
ATGGAGAAACAATATTGTCGAGTGTGCATGAACAGCGACGTGACTCTGAGAGCTATCTTCTCCAAGGACCAGGCGACAGAGCAGGCCAGTTTGCCCCATATTAATGAAATGCTGAATGATATATTAAGCCAGGATTATCGCATCCAGCGGCATGATTCCCTGCCTCAAAGCATATGTCAGTCCTGTGTACTGGATACACAGAATGCTTTCCATTTCAAGAGAAAATGTGAGCAAAGCTATAGAGATTtctgcaaacttctgggcatagACTCTGCCGGAGAAGATCTTGAGGAGACAGACTTTCAGCAGGACGATGACGAGGAGGTGGAGCTTGAGGAGAACAACGTACTGGAAAAAGACAGCCTGTCTGTCAAAGGAGAGACTAAATCGAGCTATCAATTTGTGGAGGTAATGCTTCAGGAGAAGCAAAAATCAGAAGAGGAAGATGAGCTTGTGCCCCTAGGTGACATTTGCGAGaccaaaatggaaatggataGTCTGGAACAGTGTGAAATCAAGGAACACCCCAAATCTTTGCTCTGCTCCGAGTGTGGCTTGACTCTAAAATCAGAGTACTCCCTGCGACAGCACATGGGACGTCATAAGCGCGAGGTAGAACGCTCCCATCTTTGCGAGACTTGCGGTAAAGATTTCAAAACCAAGGCCCAATTGAttatacacacacgcacgcataCCGGCGAGCGTCCGTACAAGTGTGCTCATTGCCCCAAGTCGTATCCCACACGAACCGCCCTGAGCTTGCACCTGCCCACCCATAGCAAAGAGCGGCCACACCAATGCCATCAATGCAATAAGTCCTTCTATTTGGCCCGTAATCTTAAGGCACACCAAAGACGGCACCAGGGCTTGCGACCATTCCAGTGTCCCAACTGTCCCCTGGCCTTCACCAAGAATGCTAATCTGAAGACACATCTTCGCCTGCACACAGGCGAGCGACCCTTCAAGTGTTCCAAATGTGACTTGTCGTTTGTCCAGAACCAACATCTAATCATCCATTTAAGAGGACACAATGATGATCGTCCGTTTAAGTGTACGCAATGCGAAAAATCGTTCTTTGTGAATGCCAATCTGAAGAAACATCTTCGCACCCATACGGGCGAGAAGCCTTTTAAGTGCGAGACCTGCGGGCAGGCCTTCTCTCACAATCATCACTTAAAATCCCATCAACGTATCCATACGGGAGAACGTCCCTATAAGTGCACCGAGTGTGGCAAAGCCTTTGCCTCGAATCAATCTCTGCAGAAGCATCTCATCTGGCATCAGGATAACAAGGTGAAAGCATACAAATGCTCGCATTGCCCCAAGGGTTTTGACAACATGAGGAGTCTGAAGTATCATATCAGATCGCACAAGATTTTTGTAAAGGAAGAGAAACCGCAACACCATTGTCCACACTGTGAGGTGTCTTTTGAGCTAAAAAAATCTCTGGATAAGCATATCGCCACACATCGAGACCGGCCATATAGATGCGGTCAGTGCTCCAAGGGATTTTCTCACAGTCAgacattaaaaaaacatttaaggaCACACCAGGACATCCAAGATGTCCCAGAACTGGATCAATGA
Protein Sequence
MEKQYCRVCMNSDVTLRAIFSKDQATEQASLPHINEMLNDILSQDYRIQRHDSLPQSICQSCVLDTQNAFHFKRKCEQSYRDFCKLLGIDSAGEDLEETDFQQDDDEEVELEENNVLEKDSLSVKGETKSSYQFVEVMLQEKQKSEEEDELVPLGDICETKMEMDSLEQCEIKEHPKSLLCSECGLTLKSEYSLRQHMGRHKREVERSHLCETCGKDFKTKAQLIIHTRTHTGERPYKCAHCPKSYPTRTALSLHLPTHSKERPHQCHQCNKSFYLARNLKAHQRRHQGLRPFQCPNCPLAFTKNANLKTHLRLHTGERPFKCSKCDLSFVQNQHLIIHLRGHNDDRPFKCTQCEKSFFVNANLKKHLRTHTGEKPFKCETCGQAFSHNHHLKSHQRIHTGERPYKCTECGKAFASNQSLQKHLIWHQDNKVKAYKCSHCPKGFDNMRSLKYHIRSHKIFVKEEKPQHHCPHCEVSFELKKSLDKHIATHRDRPYRCGQCSKGFSHSQTLKKHLRTHQDIQDVPELDQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00916426;
90% Identity
iTF_00917374;
80% Identity
-