Land017921.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lordiphosa andalusiaca
Gene Symbol
-
Assembly
GCA_035044965.1
Location
JAWNNM010003337.1:302621-306964[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.00019 0.012 16.3 2.2 1 23 179 201 179 201 0.97
2 18 0.00015 0.0097 16.6 1.9 1 23 207 229 207 229 0.97
3 18 1.4e-05 0.00091 19.8 2.6 1 23 235 257 235 257 0.98
4 18 3.9e-05 0.0025 18.4 4.4 1 23 263 285 263 285 0.98
5 18 3e-06 0.00019 22.0 4.6 1 23 291 313 291 313 0.99
6 18 1.4e-05 0.00086 19.9 2.2 1 23 319 341 319 341 0.99
7 18 0.63 39 5.2 1.0 1 11 347 357 347 358 0.94
8 18 3.4e-06 0.00022 21.8 2.1 1 22 494 515 494 515 0.96
9 18 1.7e-05 0.0011 19.6 4.9 1 23 522 544 522 544 0.98
10 18 0.0017 0.11 13.3 4.7 1 23 550 572 550 573 0.95
11 18 1.1e-06 6.9e-05 23.3 2.1 1 23 585 607 585 607 0.99
12 18 5.1e-07 3.2e-05 24.4 1.1 1 23 613 635 613 635 0.98
13 18 4.9e-05 0.0031 18.1 4.6 1 23 641 663 641 663 0.98
14 18 0.00027 0.017 15.8 4.1 1 23 669 691 669 691 0.99
15 18 1.4e-05 0.00091 19.8 5.0 1 23 697 719 697 719 0.98
16 18 0.00051 0.032 14.9 3.4 1 23 725 747 725 747 0.98
17 18 0.0046 0.29 11.9 5.6 1 23 753 775 753 775 0.98
18 18 2.3e-05 0.0014 19.2 2.8 1 23 781 803 781 803 0.97

Sequence Information

Coding Sequence
ATGGCCTGCCGAGCAACGAGGCCAAATGTGGCCAAGCTATGCCGCGTTTGCAGGACCAGTTTAACTGACGGTAACGACACCGACTGGCGTAATATATTTTCCGACTCCGACGCGGAACAAGGCAACTTGAGGTTTATGCTAGAGGAGGTGACTGGAAGCTCGATTAAACCTAATGAGTATCTACCCAAATGGATATGCCCCTCCTGTTTGGCAGCggcaaaaactgttttaaatttcaagcGCAGGTATGAGAAAAGTCTTCAGCTGTTAAAGCAGGAGGAAATCTCATCATTCTTGGAAGAACTACGCACCGAGGACTGGGCGCTGCATCAGGTCAATCAAGAGGAGGGGACAATGCAGTTAGACCAAAGTGATACCTCATCATTCTTGGAAGACCTGGCCAGTGAGGATTGGACGCAGGCTAGGCAAAGGGATATCACTAAAAACGAAAGCAAGGAGAGCGCATCAGAAGAGGACAGCACTGTGGAATGCGAAATGGAAGAGCACCTTCGACCTTACAGCGCCAAACGGCCCTTCGCATGTTCCCACTGCTTGAAATCTTTTACCCAGGAAGTTAGTCTAAAGTATCACGAACGAATTCACAAGCGCAAGCGCCTGTTCGATTGCTCCCACTGCTCACAGgcctttaaaacaaaagccgaCCTGGAGCTACACTTTCTCACTCATAATGGCGGGCGACCCTTCAGTTGTAAACATTGCGCTAAAGGCTTTCGCAAAGCATACAGTCTGGAGAAGCATATTCTAACTCACAGCACAGAACAACCATTCGAATGTCCTCACTGCTTGAAGAAGTTTACTTTCTCGAAATATCTCAAGATTCACCTACGCTCTCACTCTGGCGAACGACCCTTCAAATGTCCCCACTGCTCGAAGACATTCAAGCACGGAGGCAATCTAACGATTCACCTACGGAGTCACACTGGCGAACGACCATACAAGTGTTCCCTCTGCTTGGTCGCTTTTAGCAGAAATAGCAGTCTACGCAAGCACTTTCGTACCCATTCGGCAGAAGAACCCTTTGAATGTTCCCAGTGCTCCAAAacatttaaAGCAACCAGGCCAAATGTGGCCAAGCAATGCCGCGTTTGCAGCACCAGTTTGGCGGAGAACTGGAGAAATATATTCACGGACTCGGAACAAGGCGGCTTGTGGTTAATGCTAGAGGAGGTGACTGGCAGCTGGGTTAAACCTCATGAAGATCTACCTGAGGGGATATGCCCCTCTTGTTTGGCAGCGGCAAAGATTGCTCTTAATTATAAGCGACGATTTGAAAAGAGTATTCAACTGTTGAAGCAGAGCAAAACCACTTCATCCTTAAATACACTGCCCAACTCGGATTGCCCACAACTCAGCGAAGAGGACGAACTTGATCATTTTGAATCTCTCACAGGCGACGGGGAGAACAACGAGCTCAAAACCTACCCCCAAGAGAAGGGCCTACAATCCACAACTGAACCGTACGAGTGCTCCCACTGCTCGAAGATCTTCAAGTTTAAATCCAGTCTAGAGAGGCACATACGCAGTGAGATCTGTAAGCGCATCTTCAATTGTTCCCATTGCTCCGAACACTTTTCCCGTAAAAGCGCTCTGAAGGAGCATTTACGCATTCATGCTGCCGATCGTACATTTGATTGTACCCACTGCTCAAATACTTTTCCGCTTAAAAGGGACTTAACTGATCATCTACGCACTCATCATTTGCACTTACTCAGTCCTGCTGACCTTCGCAGATATGAATGCACTCACTGCTCGAAGAGTTATTCAAGTAAAGCCGGTTTAAACATTCATCTACGCACCCATACTGGCGAACGACCCTTCAAATGTACACAATGCCCAAAGAGCTTTTCACAAAACAGCGGTCTGAGGCTACACCTTGACACTCATACAGGCGAACGACCACACAAGTGTTCCCACTGCCCGAAAGCCTACTCCTTTGCATTCAGTCTGAAGGCTCACCTTCGCAAACATACTGGCGAACGACCGTTCAAGTGTTCCCACTGCCCGAAGAGCTTTCTGgagaaaaaacaattgaataaCCACACACGTATTCATTCTGGCGAGGGACTCTTCAAATGTACCCACTGCTCGAAGCCATTTACCCAATTAGGCCATCTACGAATTCACCTAACAACACACACGGGCGAGAAACCATTCAAGTGCACCTACTGCTTAATGACATTTCGGTTTAGGAACAGTTTGAAGTCCCACGAAAGAATTCACACTGGCGAGCGCCCCTTCAAGTGTTCCTACTGCCCTAAGGGATTTGCAAATAAGTGCAGTCGAAACACCCACCATATGATTCATACTGGAGAGCGACCCTACGAATGTTCCCTCTGCCACAAGACCTTTGGCCGTAAGACTAATCTAACGCTTCACCTGGGCAGGCATAATAATGAAATGAGCAAGAAGATGGCGCTGTAA
Protein Sequence
MACRATRPNVAKLCRVCRTSLTDGNDTDWRNIFSDSDAEQGNLRFMLEEVTGSSIKPNEYLPKWICPSCLAAAKTVLNFKRRYEKSLQLLKQEEISSFLEELRTEDWALHQVNQEEGTMQLDQSDTSSFLEDLASEDWTQARQRDITKNESKESASEEDSTVECEMEEHLRPYSAKRPFACSHCLKSFTQEVSLKYHERIHKRKRLFDCSHCSQAFKTKADLELHFLTHNGGRPFSCKHCAKGFRKAYSLEKHILTHSTEQPFECPHCLKKFTFSKYLKIHLRSHSGERPFKCPHCSKTFKHGGNLTIHLRSHTGERPYKCSLCLVAFSRNSSLRKHFRTHSAEEPFECSQCSKTFKATRPNVAKQCRVCSTSLAENWRNIFTDSEQGGLWLMLEEVTGSWVKPHEDLPEGICPSCLAAAKIALNYKRRFEKSIQLLKQSKTTSSLNTLPNSDCPQLSEEDELDHFESLTGDGENNELKTYPQEKGLQSTTEPYECSHCSKIFKFKSSLERHIRSEICKRIFNCSHCSEHFSRKSALKEHLRIHAADRTFDCTHCSNTFPLKRDLTDHLRTHHLHLLSPADLRRYECTHCSKSYSSKAGLNIHLRTHTGERPFKCTQCPKSFSQNSGLRLHLDTHTGERPHKCSHCPKAYSFAFSLKAHLRKHTGERPFKCSHCPKSFLEKKQLNNHTRIHSGEGLFKCTHCSKPFTQLGHLRIHLTTHTGEKPFKCTYCLMTFRFRNSLKSHERIHTGERPFKCSYCPKGFANKCSRNTHHMIHTGERPYECSLCHKTFGRKTNLTLHLGRHNNEMSKKMAL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-