Land017436.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lordiphosa andalusiaca
Gene Symbol
-
Assembly
GCA_035044965.1
Location
JAWNNM010003326.1:1929236-1933544[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 23 5e-06 0.00031 21.3 1.0 2 23 128 149 127 149 0.97
2 23 2.6e-05 0.0017 19.0 1.7 1 23 155 177 155 177 0.99
3 23 9.4e-07 5.9e-05 23.5 5.8 1 23 183 205 183 205 0.98
4 23 9.5e-05 0.006 17.2 0.6 1 23 212 234 212 234 0.98
5 23 7e-06 0.00044 20.8 1.0 2 23 238 259 237 259 0.97
6 23 0.0012 0.078 13.7 0.8 1 23 265 287 265 287 0.98
7 23 0.00031 0.019 15.6 0.4 1 23 293 315 293 315 0.98
8 23 6.7e-05 0.0042 17.7 7.9 1 23 321 343 321 343 0.99
9 23 0.00088 0.055 14.2 5.8 1 23 493 515 493 515 0.98
10 23 3.1e-06 0.0002 21.9 2.6 1 23 521 543 521 543 0.99
11 23 1.4e-06 9.1e-05 23.0 3.2 1 23 549 571 549 571 0.98
12 23 0.00011 0.0071 17.0 4.1 1 21 578 598 578 600 0.96
13 23 0.0014 0.091 13.5 1.6 3 23 608 628 608 628 0.97
14 23 8.6e-06 0.00054 20.5 6.5 1 23 634 656 634 656 0.98
15 23 2.4e-05 0.0015 19.1 9.2 1 23 662 684 662 684 0.99
16 23 8.7e-06 0.00055 20.5 0.9 1 22 690 711 690 711 0.96
17 23 0.0032 0.2 12.4 6.5 1 23 714 736 714 736 0.99
18 23 9.8e-06 0.00061 20.3 3.6 1 23 742 764 742 764 0.99
19 23 6e-07 3.8e-05 24.2 2.8 1 23 770 792 770 792 0.98
20 23 0.00068 0.042 14.6 2.2 1 23 798 820 798 820 0.97
21 23 5.3e-08 3.3e-06 27.5 2.4 1 23 826 848 826 848 0.98
22 23 1.7e-06 0.00011 22.7 0.7 1 21 854 874 854 875 0.95
23 23 0.11 6.9 7.6 3.0 3 21 880 898 878 899 0.94

Sequence Information

Coding Sequence
ATGTCAATGGATCCAAAAGTGGCCGAGCTATGCTGCGCCTGCATGTCCAGTCCAAGGGGTGGCAGCAGCACCACCTGGCTAAATATATTCACAGACATCAATTCTGACGAGCAACAAAACTGGATAAGCATAATAGAGGAGGTGACTTGCTATGCTAATGAATATACTAATGATGTACCTAAAAGGATATGCCCTTTCTGCTTGGCGGAGTTAGaaattgcattgaaatttaAGCGGCGCTTTGAAAAGagttttcaatgcttaaaCAAGCAACTGGAGCTGATGGATGAATTGGCCAACGATCAGAGCGAATCTCACTTGGATGATGATAGTACTGCTGAGGGACGTTCTACTTATGCTGACACGGGCGAGCGACCTCTCAAATGTTCAGTATGCCCAAAAGCGTATAGCCGTAAGCGGAGTCTGGACTATCATATGCGCACTCATACTGAAGAGCGTCCCTTCAAATGTGCCCACTGCTCGATGGCATTTATCCAAAAGATCAAACTACAGGCTCATCTACGCACTCATACTGGCCATCGACCCTTCGTATGTTCTCACTGCCCGAAGTCCTTCAAACATGCATGGCATCTAAAGGATCACATTCGCACTCATACTGCCGAGCGCAACTGCTTTAAGTGTTCCGAGTGCTCGATGACCTTTGGCGACTCAACCAGTCTTTCCAGTCATATTCTGTCGCATTCGGGCCTCCAGTGTTCCCAGTGCCCAGAAATTTTTAATCGTAAAAACGATCTAAAGAAACACTATCGCATTCATACAGGCGTTCAGCCCTTCAAATGTTCAAAATGTGAGTTAAATTTCGAGGAGGAGTACCAACTAACGCAACACCTTGGTACACATAATGAAGAGTCAACTTTCGAGTGTTTGCAGTGCTCGCTGACCTTTCGCCTCAAGGGGAATCTGGAACAACACCTTTTGATACATACAGCAGAGCGACCCTTCAAGTGTTCACATTGCCCAAAGAGCTATTGTCTCAAATCAGATCTAACCAAACATTTTCGAACTCACACGGGCGAACGTCCGTTCCATGGTTCCTCAAAGAGCTATTTCCAGCAGGTCAATCTACAAAACCAGCGACCCTTCAAAGCAAAAGCACTGGGGCAAAATGTGGCCGAGCTATGCTGCGTTTGCATGTCCCATCCAGGAGGTGGCAGTGGCAACAAAACCCGCTGGCCTAATATATTCACCGACTCCAATTCTGACCAGGAACCAAACTGGATGATTACCATAGAGGAGGTAACTGGCCGTCTGGTACAACCCAATGAGGATCTACCTGAAGGAATATGCGATTCCTGCTTGGCAgttttgaaaattgcattgaaattcAAGCGGCGTTTTGAGAGGAGCTTTCAGTGCTTGAGCGAGCAGTTAACCAACAAGGAGGAACCCTTGGAAAGCGAAGCGGAAGATTTCGTATCCCTCTCAGGAGATGAAAGCACTGCAGCAATTAGATACTTCGACTGTTCCTACTGTTCAAAGAGCTACACCTGTAAGAGCAGCTTGAAGTATCATATTCGCACACACACTGGAGAACGTCCCTTCAAATGTGCCCACTGCTCGATGGCATTTAGTCAAAAGGTCAATCTAAAGGTACATCAGCGATCACACACTGGCGAACGACCCTTCGTTTGTACCCTCTGCTCCAAGGCCTTCAAACATAAATGGAATCTAAAGGATCACCTTCGCACCCATTCAACCGAGCGAAACTACTTCAAGTGTACCGAGTGCTCGCTGACGTTTACACAAAATGGCAGCCTACAAAAACACCTTCGCTGTCATGCGGTCGACCAGCATGTTGGATGTTCCCTGTGCTCGAAAACCTTTAGGAAAGACAGCGACTTGAGGAATCACCTGGGCAGTCACACGGGCGAACGACCTTTTGAATGCTCCCACTGCTTCAAGACCTTTACGCTGAACAGCCATCTAAACAGACACCTTCGCATTCATACTGGAGACCGTCCTTTCAAATGTAGCTACTGCTCGAAGAGCTTTTGCTTTAAGCACAATCTACAGTTGCATCTAAGGACTCATACTGGCGACCGACGCTTTGAATGCACCCACTGCTCGAAGACATTTACCCAAGATGCCAGTCTAAAGGAGCACATGCGTATTCAACGCTACGAGTGTACCCACTGCTCGAGTAGCTTTTGCGGAAAACGCAAACTACAGCTGCATCTCCGTACTCATACGGACAAACAACCCTTCAAATGCTCCCACTGCTCAAAGATGTTTGGAACCAAACGTAATCTGGAGAATCACGTTCTCACTCATTCCGAGGAACCGGCCTTTGAGTGTGAGCACTGTTCGAAGACTTTTAACCAAAAAGGCAGTCTACAGAATCATCTTCGCATTCATACCGGTAATCGCACATACGAATGTATCCACTGCTCGAAGAACTTTCGTCAAATAAGCGCTTTAAAGACACACCTGCTTACGCATACGGGTGAACGACCCTTTGAATGTCCTCACTGCTCAAAGACTTTTGCCCAGAAGAGCAATTTGAAGAAGCATCTCTTGATTCACTCTGGCGAACGACCGTTCGCGTGTACCTACTGCTCCAAGACTTTTACACAAAAAGGTAATCTGACGGTGCATCTTCGAAATCAACGCATGGAttgcaaaaaatgtttgaagagCTTTTGCGGAACGCTAAATCTACAGGCACACATATGCAGTCAACCGGAATGA
Protein Sequence
MSMDPKVAELCCACMSSPRGGSSTTWLNIFTDINSDEQQNWISIIEEVTCYANEYTNDVPKRICPFCLAELEIALKFKRRFEKSFQCLNKQLELMDELANDQSESHLDDDSTAEGRSTYADTGERPLKCSVCPKAYSRKRSLDYHMRTHTEERPFKCAHCSMAFIQKIKLQAHLRTHTGHRPFVCSHCPKSFKHAWHLKDHIRTHTAERNCFKCSECSMTFGDSTSLSSHILSHSGLQCSQCPEIFNRKNDLKKHYRIHTGVQPFKCSKCELNFEEEYQLTQHLGTHNEESTFECLQCSLTFRLKGNLEQHLLIHTAERPFKCSHCPKSYCLKSDLTKHFRTHTGERPFHGSSKSYFQQVNLQNQRPFKAKALGQNVAELCCVCMSHPGGGSGNKTRWPNIFTDSNSDQEPNWMITIEEVTGRLVQPNEDLPEGICDSCLAVLKIALKFKRRFERSFQCLSEQLTNKEEPLESEAEDFVSLSGDESTAAIRYFDCSYCSKSYTCKSSLKYHIRTHTGERPFKCAHCSMAFSQKVNLKVHQRSHTGERPFVCTLCSKAFKHKWNLKDHLRTHSTERNYFKCTECSLTFTQNGSLQKHLRCHAVDQHVGCSLCSKTFRKDSDLRNHLGSHTGERPFECSHCFKTFTLNSHLNRHLRIHTGDRPFKCSYCSKSFCFKHNLQLHLRTHTGDRRFECTHCSKTFTQDASLKEHMRIQRYECTHCSSSFCGKRKLQLHLRTHTDKQPFKCSHCSKMFGTKRNLENHVLTHSEEPAFECEHCSKTFNQKGSLQNHLRIHTGNRTYECIHCSKNFRQISALKTHLLTHTGERPFECPHCSKTFAQKSNLKKHLLIHSGERPFACTYCSKTFTQKGNLTVHLRNQRMDCKKCLKSFCGTLNLQAHICSQPE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-