Land016812.2
Basic Information
- Insect
- Lordiphosa andalusiaca
- Gene Symbol
- br
- Assembly
- GCA_035044965.1
- Location
- JAWNNM010003267.1:12069-66137[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.5e-11 2.9e-08 33.5 0.0 1 40 806 846 806 849 0.90 2 4 8.2e-14 1.6e-10 40.8 0.1 2 39 861 898 860 901 0.94 3 4 1.9e-17 3.8e-14 52.4 0.0 1 45 915 960 915 960 0.98 4 4 2e-19 3.8e-16 58.8 0.0 1 43 967 1010 967 1011 0.97
Sequence Information
- Coding Sequence
- ATGTTCAAATTTAGCGGGCACTTCCATCTGGTCTCATTAAAGAAAATCAATAGTACGGCCTATTGCCTTGGAGTcccagcagcagcagcagcatcgaCAGCCTTGAGTCATCCCGTCAACCAGCACACCACAAGAAGCACGAGAAGTGCTCGAGAAGACACCTCTTCCATCTCCAAAATGGCTGCCGTACGTGGACATCAATATTTCAGCCTACGCTGGAATAACTATCAGAACACAATGACCTCAGTGTTTCAACAGTTGCGCGAGGATCTATCCTTTGTCGATGTGACCTTGTCCTGTGAGCACGGTTCCCTCAAAGCGCACAAGGTTGTGCTCTCCGCCTGCTCAACGTATTTCCAAAAGCTTTTGCTCGAGAATCCTTGCAAGCATCCCACAATCATTCTACCTGCTGATATCATCTTTACAGATCTGAAAAcaattattgattttgtttatcGCGGTGAAATCGATGTGACCGAATCGGAATTACAGCTCCTCGCATGCAAAGTGCAATTTTCTCGCTCCCTGGCCAGCTCTGTgtgccatcatcatcagcagcagcagctggagctggagctggaggtGGAGCTGGAGGTGGAGCTGGAGGTGGAGCTGGAGGTGGAGCTGGAGCAACTGGGacgacgacgacgacgtcccagtcccagtccaagtcccagtcccagtcccactGAGGCAACTCCAATGTTCATTTCCGGCAGTCAAACTGCGCGCGTCCTGTACTCTCTTCTCTTGTTGCAGGAGACCTCAACCACCAGTCAGCCAGGCGGTAATAAGAATTTCTCCAGCTCGGTAGTGTGCGGTCTGTTACGCACCGCCGAGCAATTGAAAATCAAGGGTCTCTGCGAGACAGCTGAGAATGCAGATGATCTGAATGATGCGGCCACTGCGACAATAACTGTGTCCGAGAATATACAACAGTCGGTTGTGGGCAATATTGTGAATGCCACCATAGTGCCGGGAGCGCCTTCACCCACGCtagagcaacagcaacagcatcagcaaGCTCACCAGGACCAACAGCAGGTGCAtgcccaacagcaacagcagcagcagcagatcaACGCGGCCCTGTTGTCCCAACACGGCGTGTCCAATAGTAACGTTGCCCTCGGCGGCCAACTGCTGAGCACAGcgagcggcagcaacagcagtagCAGCGGTGCCGGCCAACTGCAGCaggcacagcagcagcagcagcagcaggcacagTCCGCTGGCCTACAGCCCGCGCTACGCAAGTCGCGCCTCAAGCGCTCCAAGTCGCCAGATCTGCAACACCATCCGCAGACCATACTCATCCAGGGACAAAACCAAACGTCCATTGTCAGTCTGCAGCAGACGGTCGACGGCAATTATATACCAGTCGGCGGCAACGGCGACGACTCGGACGTGGATCAAGAGCACGAGCACGAACACGTTGACGAGCACGAGCACGAGCACGACCACGATAGTAAGCCGGGGAAGATCTGCAAGACAGAGCACTCGGTGGCCTCGCCAGCGTCCAACTCATCCAACGCCTCGAACAATGCAGCGGGCGTGAGCGGCGTGACAGCAGCAGGCCAAGCCATCGTCACACAAATTGTAGTAGCGCGCGACggaaaagatacaaaaaatatgacTAGTTTAGGCATGGGCATGAACGGCGGCCTGTTGGGCGTGCCCATGGGATTCCTGGACTTCACACCCGAGCCACCAGCACCATCTGCCACACCAGTCACCGTAACGGAACATGTCGATCTCTCGTGCAATCCGAGTACGGATACGCGAGATTTATCAAATCCCACCGAAGCGCTCGACATTGACAATCATCTGGCGCAACAAATCCATCGGCTTGATCAATCTCCCATGCATTCGATTGGCCATCATCACACTGGCGATGAGAGCAACTCGCAGCTGGTGCAGCACATCAAAAGTGAGGTGATCGAGGCCAAACATTTGGCGGCTGCACAGCAACATGCTCATGTCCAGGCCCAGCAACATGTCCATCATCAAgcccaccagcagcaacagcatctcCATACCCAGCAACTGTTggcccagcagcaacagcaacagcagcagcagcaacagcagcaacagcaacaccatcagcagcagcaacagaatgTGCATGCACATGGGGGTCATGTGACGCATGCGGAGATTGGTGGGGCCACAGTCATGGAGATTGATCCGAGTCAAATAAAGCATGAGCCAGGCATGATAATAACGCCAGAGATTGTCAACATGATGTCGTCGGGTCACATGGACATGTACAACTCGGATACGAGCGAGGACTCCATGATGATCGCCAATGGCTCGCCGCACGATCAAAAGGAGCCGCACTATACGAATTTGGATCAGCAACACGGCCTGGGTGGCAGCAAAGGTCAGTTTAATGGTCCCAAAGCTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAATCAAAACATGAGCCTGACGAAAGCATCTGCCATTTATGGCATCCCCTCGACCACGCTGTGGCAACGGGCTCACCGTTTGGGCATCGAAACGCCCAAGAAGGAGGGCGGCACCAAATCGTGGAACGAGGATGCATTGCAGAATGCCTTGGAGGCATTGCGATCGGGTCAAATATCCGCGAATAAAGCATCGAAAGCCTTTGGCATACCCTCATCGACGCTGTACAAGATAGCGCGTCGGGAGGGCATCCGTTTGGCAGCACCATTTAATGCCGCCCCAACCACGTGGACGCCCGAGGATCTGGAGCGTGCATTGGAGGCGATTCGAGCGGGTAATACGTCGGTACAGAAAGCGAGTGCCGAATTTGGCATACCCACAGGAACACTTTATGGACGCTGCAAGCGGGAGGGCATTGAACTGTCGCGTTCGAATCCCACACCTTGGTCGGAAGATGCCATGAACGAGGCCTTGAACTCAGTGCGCGTTGGCCAAATGTCCATCAATCAGGCGGCGATACACTACAACCTGCCCTATAGCTCCCTCTATGGCCGCTTCAAGCGTGGCAAGTACGATGTGGTGGCGAATACCAGTGGAGTGGCGCTAATGAATACCTCAGGGAATACAACCGGCAGCATTGAGATTATCGAGCATAGTCAGGAGAATTCGTTGCATATGTTGCAGCAACAGTTCCCGTACAGTCCGTCGCCGCATCCGCCGCCCACACCGCAGCATCATAGTACACCGCAGCATCACAGCTCCTCGCAGGGGCCGCCAACACCTCAGCATATGCAACAGCATGTGGTACACATGCAACAGTCGCCACATCAGggtcatcatcagcagcagcagcagcacatgCAACAGGATGTGGTTACATCGAGTAGCCAAGTGGTGCATagccagcaacagcatcaacaacaacaacagcagcagcagcagcagcaacaacagcagcagcagcaacaacagcagcagcaacaacaacagcagcaacaacagcagcaacttcaGCAGATCTATCAGCATCATGGCACGCCCGAGCGTAGTTGA
- Protein Sequence
- MFKFSGHFHLVSLKKINSTAYCLGVPAAAAASTALSHPVNQHTTRSTRSAREDTSSISKMAAVRGHQYFSLRWNNYQNTMTSVFQQLREDLSFVDVTLSCEHGSLKAHKVVLSACSTYFQKLLLENPCKHPTIILPADIIFTDLKTIIDFVYRGEIDVTESELQLLACKVQFSRSLASSVCHHHQQQQLELELEVELEVELEVELEVELEQLGRRRRRPSPSPSPSPSPTEATPMFISGSQTARVLYSLLLLQETSTTSQPGGNKNFSSSVVCGLLRTAEQLKIKGLCETAENADDLNDAATATITVSENIQQSVVGNIVNATIVPGAPSPTLEQQQQHQQAHQDQQQVHAQQQQQQQQINAALLSQHGVSNSNVALGGQLLSTASGSNSSSSGAGQLQQAQQQQQQQAQSAGLQPALRKSRLKRSKSPDLQHHPQTILIQGQNQTSIVSLQQTVDGNYIPVGGNGDDSDVDQEHEHEHVDEHEHEHDHDSKPGKICKTEHSVASPASNSSNASNNAAGVSGVTAAGQAIVTQIVVARDGKDTKNMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEALDIDNHLAQQIHRLDQSPMHSIGHHHTGDESNSQLVQHIKSEVIEAKHLAAAQQHAHVQAQQHVHHQAHQQQQHLHTQQLLAQQQQQQQQQQQQQQQHHQQQQQNVHAHGGHVTHAEIGGATVMEIDPSQIKHEPGMIITPEIVNMMSSGHMDMYNSDTSEDSMMIANGSPHDQKEPHYTNLDQQHGLGGSKGQFNGPKAWTQDDMNSALDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVANTSGVALMNTSGNTTGSIEIIEHSQENSLHMLQQQFPYSPSPHPPPTPQHHSTPQHHSSSQGPPTPQHMQQHVVHMQQSPHQGHHQQQQQHMQQDVVTSSSQVVHSQQQHQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQLQQIYQHHGTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00914605;
- 90% Identity
- iTF_00914605;
- 80% Identity
- iTF_00914605;